| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709846
Identifier: 218709846
GI number: 218709846
Start: 2010457
End: 2011764
Strand: Reverse
Name: 218709846
Synonym: VS_1859
Alternate gene names: NA
Gene position: 2011764-2010457 (Counterclockwise)
Preceding gene: 218709847
Following gene: 218709842
Centisome position: 60.98
GC content: 45.64
Gene sequence:
>1308_bases ATGTTTGATGGACTAGGGCTGTTTCTGGGGGCGTTGGGTGATGCTCTCATTGGCCCAAACCTATTTGTACCGGGAGAGCC CTTCTTTATCGCAGCGGGCTTTCAACTGTATTCAGGTGCATGGATGGCGTTGGTTTTGGTGATGCTAGGCGGTTTGCTTG GTGACCAACTCAGTTATTTTATTGGCTATAAATACGGTGCGAAAGCACAGCGAAGGCTCATTAAGTTTCGTCCCAAAACC AAACGATTAATTGCGCGCTGCCGTTACCTAATTGCTCGCAAAGGCACATACATCATTCTTTTTGCTCGCTTATTAGGGCC TATCGCTTGGGTTGTGCCATTTATAGCGGGCTCACATCGTGTACGGTGGCGCAATTTCAGTGTGTTGGCGTTTATCGGCT TGGCTCTTGGTGGTGGACAGTTCATTGCTTGGGGCATGTTACTGGCGCACGGTGTTGAAAACTTCCCGTGGCTTAATAGC CTCAAGATATTTATCTCTGAGCATAATAGCTTGATCGCCGGTGTGTTCACGGTATTGGTCTTCACCATTATTGGTTATCG AATGAAGTGGCGACGCTTGGTGCTTAAATCCAGTGCGCTGTTGTTGGCGTGGGTGTTGTTTGCGAACTACGCTCACTTTT TCTGGAAAGCCGATGATTTTCAGAATCAACCAGAGACGGCTCAAATTGACAAAGTCGACTGGAATTCGGTTACCTATAAA GCGTTCCCAGGCAAATCTTCATTCTACTCGGCACAAGCTATCAACGTACTATATGTTGGAGCAACCCCAAGAGACTTAAT GAAACAATTGGGCTGGATAGAAAATCAAACTTTCTCTCGAAATGAGATTGAATGGGCTGGCTATCTCGCATTGCTTAGAG ACAAAACGCCGCCAGTGTCCGATTTGTATTGGCGAGACAAGCCGCAAGATATGGCGTTTCAATTGCCGGGTAATTTGATG AAGCGCAGCCATATTCGTTGGTGGCGTGCTGGTGTTGATGTTCAAACTAACCAGCCTCAGTGGTTAGGCGCAATTAGCTA TGACGATGGCCTTAAAGTCACGCCTTACTCAGGCATTGTGACCGTACTTCATAACATTGACCCTAATGTTGATGAAGAGC GAGATAGGCTTGCTAATCAGATACGAACTTCACTACCAGATATTGAACTAGACAAGTACCCATTAGCAACGGTAGAAGTA ATGAATGAAGATCATGACTATTATACCGACGGTAAGATCTTGATGATCGGAGTCGCAACTCATAATGATAATTTACAAAC TCTAGATGTCGCTGTGAATGAGATATAG
Upstream 100 bases:
>100_bases TTAAAGCCAATGTAAGACGCTTTTTTAAAGGCGAAATGCGTAACAACGAGATGAACTACAAGTTCGGTCATTATAAAGAA CAGTAAGCACTGAGGTTGTT
Downstream 100 bases:
>100_bases GGTCGTATGTAAGGTCGATTGAACTAAGCCCTAGCGTTGTGCTAGGGCTTATCGTGTTTACTTGGTTTACTTGGTTTACT TAGCGCGTTTAGCTTATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYFIGYKYGAKAQRRLIKFRPKT KRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHRVRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNS LKIFISEHNSLIAGVFTVLVFTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVSDLYWRDKPQDMAFQLPGNLM KRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIVTVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEV MNEDHDYYTDGKILMIGVATHNDNLQTLDVAVNEI
Sequences:
>Translated_435_residues MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYFIGYKYGAKAQRRLIKFRPKT KRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHRVRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNS LKIFISEHNSLIAGVFTVLVFTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVSDLYWRDKPQDMAFQLPGNLM KRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIVTVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEV MNEDHDYYTDGKILMIGVATHNDNLQTLDVAVNEI >Mature_435_residues MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYFIGYKYGAKAQRRLIKFRPKT KRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHRVRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNS LKIFISEHNSLIAGVFTVLVFTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVSDLYWRDKPQDMAFQLPGNLM KRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIVTVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEV MNEDHDYYTDGKILMIGVATHNDNLQTLDVAVNEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49381; Mature: 49381
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYF CCCCHHHHHHHHHHHHHCCCEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH IGYKYGAKAQRRLIKFRPKTKRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHR HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCE VRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNSLKIFISEHNSLIAGVFTVLV EEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHHHHHH FTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCCCEEEE AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVS ECCCCCCCEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC DLYWRDKPQDMAFQLPGNLMKRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIV CCCCCCCCCCCEEECCCHHHHHHCCHHHHCCCCEECCCCCEEEEEECCCCCEECCCHHHH TVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEVMNEDHDYYTDGKILMIGVAT HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCEEEEEEEEE HNDNLQTLDVAVNEI CCCCCEEEEEEEECC >Mature Secondary Structure MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYF CCCCHHHHHHHHHHHHHCCCEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH IGYKYGAKAQRRLIKFRPKTKRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHR HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCE VRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNSLKIFISEHNSLIAGVFTVLV EEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHHHHHH FTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCCCEEEE AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVS ECCCCCCCEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC DLYWRDKPQDMAFQLPGNLMKRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIV CCCCCCCCCCCEEECCCHHHHHHCCHHHHCCCCEECCCCCEEEEEECCCCCEECCCHHHH TVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEVMNEDHDYYTDGKILMIGVAT HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCEEEEEEEEE HNDNLQTLDVAVNEI CCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA