Definition Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession NC_011753
Length 3,299,303

Click here to switch to the map view.

The map label for this gene is 218709846

Identifier: 218709846

GI number: 218709846

Start: 2010457

End: 2011764

Strand: Reverse

Name: 218709846

Synonym: VS_1859

Alternate gene names: NA

Gene position: 2011764-2010457 (Counterclockwise)

Preceding gene: 218709847

Following gene: 218709842

Centisome position: 60.98

GC content: 45.64

Gene sequence:

>1308_bases
ATGTTTGATGGACTAGGGCTGTTTCTGGGGGCGTTGGGTGATGCTCTCATTGGCCCAAACCTATTTGTACCGGGAGAGCC
CTTCTTTATCGCAGCGGGCTTTCAACTGTATTCAGGTGCATGGATGGCGTTGGTTTTGGTGATGCTAGGCGGTTTGCTTG
GTGACCAACTCAGTTATTTTATTGGCTATAAATACGGTGCGAAAGCACAGCGAAGGCTCATTAAGTTTCGTCCCAAAACC
AAACGATTAATTGCGCGCTGCCGTTACCTAATTGCTCGCAAAGGCACATACATCATTCTTTTTGCTCGCTTATTAGGGCC
TATCGCTTGGGTTGTGCCATTTATAGCGGGCTCACATCGTGTACGGTGGCGCAATTTCAGTGTGTTGGCGTTTATCGGCT
TGGCTCTTGGTGGTGGACAGTTCATTGCTTGGGGCATGTTACTGGCGCACGGTGTTGAAAACTTCCCGTGGCTTAATAGC
CTCAAGATATTTATCTCTGAGCATAATAGCTTGATCGCCGGTGTGTTCACGGTATTGGTCTTCACCATTATTGGTTATCG
AATGAAGTGGCGACGCTTGGTGCTTAAATCCAGTGCGCTGTTGTTGGCGTGGGTGTTGTTTGCGAACTACGCTCACTTTT
TCTGGAAAGCCGATGATTTTCAGAATCAACCAGAGACGGCTCAAATTGACAAAGTCGACTGGAATTCGGTTACCTATAAA
GCGTTCCCAGGCAAATCTTCATTCTACTCGGCACAAGCTATCAACGTACTATATGTTGGAGCAACCCCAAGAGACTTAAT
GAAACAATTGGGCTGGATAGAAAATCAAACTTTCTCTCGAAATGAGATTGAATGGGCTGGCTATCTCGCATTGCTTAGAG
ACAAAACGCCGCCAGTGTCCGATTTGTATTGGCGAGACAAGCCGCAAGATATGGCGTTTCAATTGCCGGGTAATTTGATG
AAGCGCAGCCATATTCGTTGGTGGCGTGCTGGTGTTGATGTTCAAACTAACCAGCCTCAGTGGTTAGGCGCAATTAGCTA
TGACGATGGCCTTAAAGTCACGCCTTACTCAGGCATTGTGACCGTACTTCATAACATTGACCCTAATGTTGATGAAGAGC
GAGATAGGCTTGCTAATCAGATACGAACTTCACTACCAGATATTGAACTAGACAAGTACCCATTAGCAACGGTAGAAGTA
ATGAATGAAGATCATGACTATTATACCGACGGTAAGATCTTGATGATCGGAGTCGCAACTCATAATGATAATTTACAAAC
TCTAGATGTCGCTGTGAATGAGATATAG

Upstream 100 bases:

>100_bases
TTAAAGCCAATGTAAGACGCTTTTTTAAAGGCGAAATGCGTAACAACGAGATGAACTACAAGTTCGGTCATTATAAAGAA
CAGTAAGCACTGAGGTTGTT

Downstream 100 bases:

>100_bases
GGTCGTATGTAAGGTCGATTGAACTAAGCCCTAGCGTTGTGCTAGGGCTTATCGTGTTTACTTGGTTTACTTGGTTTACT
TAGCGCGTTTAGCTTATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYFIGYKYGAKAQRRLIKFRPKT
KRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHRVRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNS
LKIFISEHNSLIAGVFTVLVFTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK
AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVSDLYWRDKPQDMAFQLPGNLM
KRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIVTVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEV
MNEDHDYYTDGKILMIGVATHNDNLQTLDVAVNEI

Sequences:

>Translated_435_residues
MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYFIGYKYGAKAQRRLIKFRPKT
KRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHRVRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNS
LKIFISEHNSLIAGVFTVLVFTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK
AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVSDLYWRDKPQDMAFQLPGNLM
KRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIVTVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEV
MNEDHDYYTDGKILMIGVATHNDNLQTLDVAVNEI
>Mature_435_residues
MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYFIGYKYGAKAQRRLIKFRPKT
KRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHRVRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNS
LKIFISEHNSLIAGVFTVLVFTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK
AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVSDLYWRDKPQDMAFQLPGNLM
KRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIVTVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEV
MNEDHDYYTDGKILMIGVATHNDNLQTLDVAVNEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49381; Mature: 49381

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYF
CCCCHHHHHHHHHHHHHCCCEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGYKYGAKAQRRLIKFRPKTKRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHR
HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCE
VRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNSLKIFISEHNSLIAGVFTVLV
EEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHHHHHH
FTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCCCEEEE
AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVS
ECCCCCCCEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
DLYWRDKPQDMAFQLPGNLMKRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIV
CCCCCCCCCCCEEECCCHHHHHHCCHHHHCCCCEECCCCCEEEEEECCCCCEECCCHHHH
TVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEVMNEDHDYYTDGKILMIGVAT
HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCEEEEEEEEE
HNDNLQTLDVAVNEI
CCCCCEEEEEEEECC
>Mature Secondary Structure
MFDGLGLFLGALGDALIGPNLFVPGEPFFIAAGFQLYSGAWMALVLVMLGGLLGDQLSYF
CCCCHHHHHHHHHHHHHCCCEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGYKYGAKAQRRLIKFRPKTKRLIARCRYLIARKGTYIILFARLLGPIAWVVPFIAGSHR
HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCE
VRWRNFSVLAFIGLALGGGQFIAWGMLLAHGVENFPWLNSLKIFISEHNSLIAGVFTVLV
EEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHHHHHH
FTIIGYRMKWRRLVLKSSALLLAWVLFANYAHFFWKADDFQNQPETAQIDKVDWNSVTYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCCCEEEE
AFPGKSSFYSAQAINVLYVGATPRDLMKQLGWIENQTFSRNEIEWAGYLALLRDKTPPVS
ECCCCCCCEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
DLYWRDKPQDMAFQLPGNLMKRSHIRWWRAGVDVQTNQPQWLGAISYDDGLKVTPYSGIV
CCCCCCCCCCCEEECCCHHHHHHCCHHHHCCCCEECCCCCEEEEEECCCCCEECCCHHHH
TVLHNIDPNVDEERDRLANQIRTSLPDIELDKYPLATVEVMNEDHDYYTDGKILMIGVAT
HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCEEEEEEEEE
HNDNLQTLDVAVNEI
CCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA