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The map label for this gene is yfgF [C]

Identifier: 218709842

GI number: 218709842

Start: 2005157

End: 2007541

Strand: Reverse

Name: yfgF [C]

Synonym: VS_1855

Alternate gene names: 218709842

Gene position: 2007541-2005157 (Counterclockwise)

Preceding gene: 218709846

Following gene: 218709840

Centisome position: 60.85

GC content: 35.93

Gene sequence:

>2385_bases
GTGTCATTTACAGTACTTGGTATGCTGCTTTTTTCAGTGCTTATCACATTCACTAGCCATGCCAATGAATTAGATTTCAA
GCGAATAAGTGATTTCGAATATGGTATGGTCGCCACTGACTCCCCAATTGATACCGTTATTCATACTGAATATGAATGGA
AGCCTATTGTTACTTGTATCCCCAAACCTAATCAGTCGTGTTGGTTTAAGCTTTCAATATCCTCGGACGACCTCTCTATT
TATAATCATCTGGTATGGAAATCTTTATCCTCACGCTCAGGAGAACTGTTTTTTGTTAACCAAGATGGAATAACTGTCGG
TGATTTTTCGTTTGAATACTATCGCTCGTTAAAGCTGAAACAAGACTTTAAATATCGTTATTTTCTCGTAAAGTTTGCTA
AAGGAAAGACTGTAAATACTAGTGCTTTACTGGTGAAAGAACAAAAACTCAAACAAGCGCTTGTAATGAAAGATGGGGTG
ATTCTAGCCTTATTTATTTTGTCGAGTGCGATCTCTTTAGTTTATGTTTATTTTGCTTGGCCAATTAAGCGATTTAAAAC
ACTATTCATGACATGTTATATATTATTGTTTTCTATTTTTTATATGTATAAATTTGGGTTTTTATGGGATGGTTATGATA
AAAAAGGGACGTATGTAATAGATTTTTTTAGAAGCGACTATTGGTTCGTTTCTTATTCTCTCTCCCTAGTTTGCATATAT
TTGATGCTCGTTTTTTCAAGTTGCGATAGAGTGAATACCAAGCATTTATTAACCTGTTTTTTATTTGTTTTTCTCCAGGT
TCTGTCTATTTATGTTAACTTGAGTGTTTTAGTTAGTTTTTTGATTAGCACTATATTATCAGCCGTTGTTATCGCATTTT
GTTTGATAGCAAAGGAAGTTAAGAATAAAAAACAGATCATAATTAGTTATCTTTCATGTTTTGTCATGTCTGTTATTTCA
CTCGAATCCTCGATGAGTCTGTCGCTTACTTCTGGATATTACTATCTAATTCAAACCTTATTCTATCTGTCGCATGCCTC
TTTCGTGATTGCGTGTGTTTACGATCTTGGTGAGTTGAGAGTGATTAATTTAGGTGACTATAAGAAATTACTGTCTAGCT
CTGACAAGGATTTCATGACAGGTCTGTATAATCGAAAGTCTATAGAATATAAAAAAGTTATCGAGTTTTCTTGTTGTTAT
TATTACATTGATGCAAATCAGTTGAAGTTTCTCAATGATAGTCAAGGTCACCATGTGGGTGATCGGATGTTGATTAATCT
AGCTATGCGTTTCAAAAAGATAGCAGCTCGAGGTATAGGTCAGGCGTATAGAGTCGGTGGCGATGAATTTGTATTAATTT
GCCAAACGTCTGTTTCCGAAGAGTTACTACATTATTTGTTGGAACAAAACCTCACACAAGAAACAGAAAATGCTCTAAGC
TTTAGTTTTGGCCGTTATCGAAGTGGTCCTAATGAATCTGTCGAAGACTGTATTTATAAAGCTGAATACTGTTGCCGTAA
AGCAAAGTCCAACAATGAACCTTACCAAGATTGGCAACAACAAGACGGGGTTATGCTCTATAGTTTACCGAATCTTAGGG
AAGAGGCGGTTGAACTGCTTAACTCGGATAGGTTGCTTTGCTTTGCTCAAAAAATTCATTCTTTAAAGGGTGTTGCTTCG
AGCTATGAGCTACTGTGTCGTTTAAAAATGGAAGACGAAGAGGGGCGTGAAAAAATCGTTTCTGCTGGTGAATTGCTCGA
TGTTGTAGCCTCTCATGGGCTTGAGAAGGAGCTCGATTCTCGTATGCTTACTTACGCAATTGGCTTACTTGAGCATTATT
CAACTATTCAATTGTCATTAAACTTCTCAGTTAAAACCATTTTCGATATGAGTGTTATCGATCGTTTATGTCATCTACCC
CCTTATATCCGTTCCCGTTTATGTGTTGAAGTGACTGAGCTTGTTTTTTATCGTGCAGATGAGAAGTTTCGAAAAATAGT
AGAGCGACTACAACACCACCAGATAATAGTTGCCTTAGATGATTTTGGTTCAGGTTATTCATCGTATTCAATTTTATCTG
AAGGCTGTTTTGATACGATCAAGCTTGATGGTTCGCTTGTTGAAAATATTAACAGTTCTGATTTTAAGAAAAAAATGGTG
CACTCATTAGTTGAGTTGGCAGAAATGAGCCAAACTAAAGTGGTTGCAGAGCGTGTTGAAACAATTGAAGAGTTAAGAAC
TTTAGAAACGCTAGGCATTGACTTTATTCAAGGCTTTTATATTCATCGGCCAACTTTAGCCATTGAGCTTTTTGATAATA
TGGAAAAAGAGGCGCGGGAATCAGAAAAAGCTGAACGCAATCTAATTTGTGGTTTAACAAGTTAA

Upstream 100 bases:

>100_bases
ATTCGCTTACAAATTACAAATAATTAACATGGTAAGCTTGCAAGTATATGGATTATAGGGGCTTTGTTGCCACGCGACTT
GACTACAAAAGGACTTTATT

Downstream 100 bases:

>100_bases
CTCATGTGTGGTCATTAGAATGTGAATAAAAGGAGTGTCGATACTCCTTTTATTAATTCTGTTGATTATTTGGATTCTAT
TGCTTCAGTTCATCTTCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 794; Mature: 793

Protein sequence:

>794_residues
MSFTVLGMLLFSVLITFTSHANELDFKRISDFEYGMVATDSPIDTVIHTEYEWKPIVTCIPKPNQSCWFKLSISSDDLSI
YNHLVWKSLSSRSGELFFVNQDGITVGDFSFEYYRSLKLKQDFKYRYFLVKFAKGKTVNTSALLVKEQKLKQALVMKDGV
ILALFILSSAISLVYVYFAWPIKRFKTLFMTCYILLFSIFYMYKFGFLWDGYDKKGTYVIDFFRSDYWFVSYSLSLVCIY
LMLVFSSCDRVNTKHLLTCFLFVFLQVLSIYVNLSVLVSFLISTILSAVVIAFCLIAKEVKNKKQIIISYLSCFVMSVIS
LESSMSLSLTSGYYYLIQTLFYLSHASFVIACVYDLGELRVINLGDYKKLLSSSDKDFMTGLYNRKSIEYKKVIEFSCCY
YYIDANQLKFLNDSQGHHVGDRMLINLAMRFKKIAARGIGQAYRVGGDEFVLICQTSVSEELLHYLLEQNLTQETENALS
FSFGRYRSGPNESVEDCIYKAEYCCRKAKSNNEPYQDWQQQDGVMLYSLPNLREEAVELLNSDRLLCFAQKIHSLKGVAS
SYELLCRLKMEDEEGREKIVSAGELLDVVASHGLEKELDSRMLTYAIGLLEHYSTIQLSLNFSVKTIFDMSVIDRLCHLP
PYIRSRLCVEVTELVFYRADEKFRKIVERLQHHQIIVALDDFGSGYSSYSILSEGCFDTIKLDGSLVENINSSDFKKKMV
HSLVELAEMSQTKVVAERVETIEELRTLETLGIDFIQGFYIHRPTLAIELFDNMEKEARESEKAERNLICGLTS

Sequences:

>Translated_794_residues
MSFTVLGMLLFSVLITFTSHANELDFKRISDFEYGMVATDSPIDTVIHTEYEWKPIVTCIPKPNQSCWFKLSISSDDLSI
YNHLVWKSLSSRSGELFFVNQDGITVGDFSFEYYRSLKLKQDFKYRYFLVKFAKGKTVNTSALLVKEQKLKQALVMKDGV
ILALFILSSAISLVYVYFAWPIKRFKTLFMTCYILLFSIFYMYKFGFLWDGYDKKGTYVIDFFRSDYWFVSYSLSLVCIY
LMLVFSSCDRVNTKHLLTCFLFVFLQVLSIYVNLSVLVSFLISTILSAVVIAFCLIAKEVKNKKQIIISYLSCFVMSVIS
LESSMSLSLTSGYYYLIQTLFYLSHASFVIACVYDLGELRVINLGDYKKLLSSSDKDFMTGLYNRKSIEYKKVIEFSCCY
YYIDANQLKFLNDSQGHHVGDRMLINLAMRFKKIAARGIGQAYRVGGDEFVLICQTSVSEELLHYLLEQNLTQETENALS
FSFGRYRSGPNESVEDCIYKAEYCCRKAKSNNEPYQDWQQQDGVMLYSLPNLREEAVELLNSDRLLCFAQKIHSLKGVAS
SYELLCRLKMEDEEGREKIVSAGELLDVVASHGLEKELDSRMLTYAIGLLEHYSTIQLSLNFSVKTIFDMSVIDRLCHLP
PYIRSRLCVEVTELVFYRADEKFRKIVERLQHHQIIVALDDFGSGYSSYSILSEGCFDTIKLDGSLVENINSSDFKKKMV
HSLVELAEMSQTKVVAERVETIEELRTLETLGIDFIQGFYIHRPTLAIELFDNMEKEARESEKAERNLICGLTS
>Mature_793_residues
SFTVLGMLLFSVLITFTSHANELDFKRISDFEYGMVATDSPIDTVIHTEYEWKPIVTCIPKPNQSCWFKLSISSDDLSIY
NHLVWKSLSSRSGELFFVNQDGITVGDFSFEYYRSLKLKQDFKYRYFLVKFAKGKTVNTSALLVKEQKLKQALVMKDGVI
LALFILSSAISLVYVYFAWPIKRFKTLFMTCYILLFSIFYMYKFGFLWDGYDKKGTYVIDFFRSDYWFVSYSLSLVCIYL
MLVFSSCDRVNTKHLLTCFLFVFLQVLSIYVNLSVLVSFLISTILSAVVIAFCLIAKEVKNKKQIIISYLSCFVMSVISL
ESSMSLSLTSGYYYLIQTLFYLSHASFVIACVYDLGELRVINLGDYKKLLSSSDKDFMTGLYNRKSIEYKKVIEFSCCYY
YIDANQLKFLNDSQGHHVGDRMLINLAMRFKKIAARGIGQAYRVGGDEFVLICQTSVSEELLHYLLEQNLTQETENALSF
SFGRYRSGPNESVEDCIYKAEYCCRKAKSNNEPYQDWQQQDGVMLYSLPNLREEAVELLNSDRLLCFAQKIHSLKGVASS
YELLCRLKMEDEEGREKIVSAGELLDVVASHGLEKELDSRMLTYAIGLLEHYSTIQLSLNFSVKTIFDMSVIDRLCHLPP
YIRSRLCVEVTELVFYRADEKFRKIVERLQHHQIIVALDDFGSGYSSYSILSEGCFDTIKLDGSLVENINSSDFKKKMVH
SLVELAEMSQTKVVAERVETIEELRTLETLGIDFIQGFYIHRPTLAIELFDNMEKEARESEKAERNLICGLTS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788849, Length=264, Percent_Identity=29.9242424242424, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=347, Percent_Identity=25.9365994236311, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI1787541, Length=458, Percent_Identity=23.5807860262009, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=26.25, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786507, Length=126, Percent_Identity=34.9206349206349, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787055, Length=212, Percent_Identity=27.8301886792453, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788502, Length=119, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790496, Length=226, Percent_Identity=25.2212389380531, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 91449; Mature: 91318

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTVLGMLLFSVLITFTSHANELDFKRISDFEYGMVATDSPIDTVIHTEYEWKPIVTCI
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEECCCCCHHHEECCCCCCEEEEEE
PKPNQSCWFKLSISSDDLSIYNHLVWKSLSSRSGELFFVNQDGITVGDFSFEYYRSLKLK
CCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCHHHHHHHHHC
QDFKYRYFLVKFAKGKTVNTSALLVKEQKLKQALVMKDGVILALFILSSAISLVYVYFAW
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
PIKRFKTLFMTCYILLFSIFYMYKFGFLWDGYDKKGTYVIDFFRSDYWFVSYSLSLVCIY
HHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEECCCEEEEHHHHHHHHHH
LMLVFSSCDRVNTKHLLTCFLFVFLQVLSIYVNLSVLVSFLISTILSAVVIAFCLIAKEV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNKKQIIISYLSCFVMSVISLESSMSLSLTSGYYYLIQTLFYLSHASFVIACVYDLGELR
CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VINLGDYKKLLSSSDKDFMTGLYNRKSIEYKKVIEFSCCYYYIDANQLKFLNDSQGHHVG
EEECCHHHHHHCCCCCHHHHHHHCCCCCCHHHHHEEEEEEEEEECCCEEECCCCCCCCHH
DRMLINLAMRFKKIAARGIGQAYRVGGDEFVLICQTSVSEELLHYLLEQNLTQETENALS
HHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHH
FSFGRYRSGPNESVEDCIYKAEYCCRKAKSNNEPYQDWQQQDGVMLYSLPNLREEAVELL
HCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHH
NSDRLLCFAQKIHSLKGVASSYELLCRLKMEDEEGREKIVSAGELLDVVASHGLEKELDS
CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMLTYAIGLLEHYSTIQLSLNFSVKTIFDMSVIDRLCHLPPYIRSRLCVEVTELVFYRAD
HHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
EKFRKIVERLQHHQIIVALDDFGSGYSSYSILSEGCFDTIKLDGSLVENINSSDFKKKMV
HHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHCCCHHEEECCHHHHCCCCHHHHHHHH
HSLVELAEMSQTKVVAERVETIEELRTLETLGIDFIQGFYIHRPTLAIELFDNMEKEARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEHHHHHHHHHHHH
SEKAERNLICGLTS
HHHHHCCEEECCCC
>Mature Secondary Structure 
SFTVLGMLLFSVLITFTSHANELDFKRISDFEYGMVATDSPIDTVIHTEYEWKPIVTCI
CHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEECCCCCHHHEECCCCCCEEEEEE
PKPNQSCWFKLSISSDDLSIYNHLVWKSLSSRSGELFFVNQDGITVGDFSFEYYRSLKLK
CCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCHHHHHHHHHC
QDFKYRYFLVKFAKGKTVNTSALLVKEQKLKQALVMKDGVILALFILSSAISLVYVYFAW
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
PIKRFKTLFMTCYILLFSIFYMYKFGFLWDGYDKKGTYVIDFFRSDYWFVSYSLSLVCIY
HHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEECCCEEEEHHHHHHHHHH
LMLVFSSCDRVNTKHLLTCFLFVFLQVLSIYVNLSVLVSFLISTILSAVVIAFCLIAKEV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNKKQIIISYLSCFVMSVISLESSMSLSLTSGYYYLIQTLFYLSHASFVIACVYDLGELR
CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VINLGDYKKLLSSSDKDFMTGLYNRKSIEYKKVIEFSCCYYYIDANQLKFLNDSQGHHVG
EEECCHHHHHHCCCCCHHHHHHHCCCCCCHHHHHEEEEEEEEEECCCEEECCCCCCCCHH
DRMLINLAMRFKKIAARGIGQAYRVGGDEFVLICQTSVSEELLHYLLEQNLTQETENALS
HHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHH
FSFGRYRSGPNESVEDCIYKAEYCCRKAKSNNEPYQDWQQQDGVMLYSLPNLREEAVELL
HCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHH
NSDRLLCFAQKIHSLKGVASSYELLCRLKMEDEEGREKIVSAGELLDVVASHGLEKELDS
CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMLTYAIGLLEHYSTIQLSLNFSVKTIFDMSVIDRLCHLPPYIRSRLCVEVTELVFYRAD
HHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
EKFRKIVERLQHHQIIVALDDFGSGYSSYSILSEGCFDTIKLDGSLVENINSSDFKKKMV
HHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHCCCHHEEECCHHHHCCCCHHHHHHHH
HSLVELAEMSQTKVVAERVETIEELRTLETLGIDFIQGFYIHRPTLAIELFDNMEKEARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEHHHHHHHHHHHH
SEKAERNLICGLTS
HHHHHCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]