Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 218709528

GI number: 218709528

Start: 1675489

End: 1675959

Strand: Direct

Name: yhjC [H]

Synonym: VS_1537

Alternate gene names: 218709528

Gene position: 1675489-1675959 (Clockwise)

Preceding gene: 218709526

Following gene: 218709529

Centisome position: 50.78

GC content: 45.86

Gene sequence:

>471_bases
ATGAAAATCGAAGATCTTAAGTTGTTCACCACCGTTGTCGAACTGGGTAGTTTTACTGCCGCCGCTAACGCTCTTGATCT
TCCGCGAGCTAACGTTAGCCGTAGAATTAACGACCTTGAGAAATCTCTCGGCATTCAACTGTTCTTTAGAACCACACGAA
GCCTCTCCTTAACCAAATCTGGCGAGCTCTATTACAAAGAATTACTCAATGCATTGAGTGCGCTCGACAAAGCAAACCAT
GTCGCTTCCAACCTGTCAGAGGTTGCACACGGACAAATTAAGATTGGTCTATTGCCTGAAACCAGCGATATCATGCAGTC
GACTCTGTTTAAATTCCAAGATATGTATCCTAAGGTCGAGCTTGATATTCGCAACATTAGTAACGGCTTTGTCGACATGT
ACCGTCAAGGGTTAGACCTCGCTCGCTATGCATGGTGGTACGTTGAGCGACGCAAACGTGGTTGCCCGTAA

Upstream 100 bases:

>100_bases
CACCAATAGGTTATTAATTATTCGTTGTTTTTTCGATTTTATGTACTATTTGATATACGATAACTGTTGTCATCCAATAC
CCAAATTCGAAACCAACCCT

Downstream 100 bases:

>100_bases
AGTGATGGTTCTTCAACGTATTTTTGTCGCAAGCCCTGAATTTATTGAGAAACAAGGCAAGCCTTCAAGCCTAAGAGAGC
TCACTAATTACCCATTTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKIEDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKSGELYYKELLNALSALDKANH
VASNLSEVAHGQIKIGLLPETSDIMQSTLFKFQDMYPKVELDIRNISNGFVDMYRQGLDLARYAWWYVERRKRGCP

Sequences:

>Translated_156_residues
MKIEDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKSGELYYKELLNALSALDKANH
VASNLSEVAHGQIKIGLLPETSDIMQSTLFKFQDMYPKVELDIRNISNGFVDMYRQGLDLARYAWWYVERRKRGCP
>Mature_156_residues
MKIEDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKSGELYYKELLNALSALDKANH
VASNLSEVAHGQIKIGLLPETSDIMQSTLFKFQDMYPKVELDIRNISNGFVDMYRQGLDLARYAWWYVERRKRGCP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=139, Percent_Identity=33.8129496402878, Blast_Score=76, Evalue=9e-16,
Organism=Escherichia coli, GI1786401, Length=154, Percent_Identity=30.5194805194805, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=135, Percent_Identity=31.1111111111111, Blast_Score=70, Evalue=5e-14,
Organism=Escherichia coli, GI1787601, Length=141, Percent_Identity=29.7872340425532, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789639, Length=145, Percent_Identity=28.9655172413793, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=140, Percent_Identity=31.4285714285714, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1788706, Length=149, Percent_Identity=31.5436241610738, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1787806, Length=130, Percent_Identity=28.4615384615385, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=145, Percent_Identity=35.1724137931034, Blast_Score=61, Evalue=3e-11,
Organism=Escherichia coli, GI145693105, Length=123, Percent_Identity=26.8292682926829, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 17793; Mature: 17793

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKS
CCCCHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHCHHHEEEHHCCEECCCC
GELYYKELLNALSALDKANHVASNLSEVAHGQIKIGLLPETSDIMQSTLFKFQDMYPKVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
LDIRNISNGFVDMYRQGLDLARYAWWYVERRKRGCP
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIEDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKS
CCCCHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHCHHHEEEHHCCEECCCC
GELYYKELLNALSALDKANHVASNLSEVAHGQIKIGLLPETSDIMQSTLFKFQDMYPKVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
LDIRNISNGFVDMYRQGLDLARYAWWYVERRKRGCP
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]