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The map label for this gene is kpsD [H]

Identifier: 218709512

GI number: 218709512

Start: 1654765

End: 1656864

Strand: Direct

Name: kpsD [H]

Synonym: VS_1521

Alternate gene names: 218709512

Gene position: 1654765-1656864 (Clockwise)

Preceding gene: 218709511

Following gene: 218709513

Centisome position: 50.15

GC content: 45.33

Gene sequence:

>2100_bases
ATGAAATCATTGATCGCTTTTATCATCACCCTATCGTTAAGCTTTACGAGTGTCGTAAATGCTAACGAAGAGTTTTCAGA
CGCGGTTCAAGTCGGTGACCTTATCCAAGTTAACGTACCCGGTGAAAGTACGTTGAACAAAGGGTTCCAAGTGGATAAAC
GTGGCCGCATTACCCTCCCTGAAGTGGGCGCCGTATTTGTTGCGGGTTATAACAGTGAACAACTTAACAAAGTCGTTTTA
GAGTCACTGGCTACCGCTTATAAAGATCTTTCAAACGCTTCGGTATATGTAAAAGAGCAGCAAATTATCATCTACGTGCA
AGGTTATGTAGAACAACCCGGTGAATACACACTGGCGTTAGGCTCAAGTATCCAAATGGCACTCTACGCAGCAGGTGGAT
TACGTCCCGGCGCACAACTGGACAAATTGATACTTAAGCGAGGTGCGGACAAGAAAGAGTTTAACTACAAACGATTCCTT
GATTCAGGTGATGAATCAACACTACCTACTCTGCAATCACTGGATTCATTATTCGTTCCAGCTTCCCCATTAGTCGGTAA
CATCGAGCAAGAGTTTGACGCAGCAAAGCTTGCAAACTCAGGTGACAGTGCTGACTCTCGCAATTCGATTAAAGTGTTTG
GTGAGGTTAACGCGCCGGGTTCGTTCACTTACAAAGAGAACACCGACCTTGTCGATGTATTAATGCGTTCAGGCGGGGTA
ACTCGCTATGCCAGTGTTGAACAAATCCGAGTAATTTCAAATAATACGCCTACGCTGTTCAACCTTAAGCGTTATTTGGA
TTCTGGTGACGAAAGCCTACTTCCAATCTTACGCCCAGGTGCAACCATTTTTGTGCCGAAGCAAGAAGAAGAGATCAAAT
CCGGCGCCAACACGGTTTACGTTATGGGTGAAGTTGCCGCTCCCGGTGCTTTTGAAGGAAAAAGAGACGCCACCTTCATG
GATATCCTTGCGAATGCTGGCGGTCCTACTCGATTTGCAGAATCGCGCCAAATACGCGTGATTAAAGCGGATGGCAGAGT
ACTTAAATTCGATTTAGCGGCTTACACAGAAGGCCTACCTAACTCTAATCCACCGAGTATTAAAGCCGGTGACGCTATTT
TCGTTCCAGAGAAAACCGACATGAACGAGAAGTCTTGGTTAAAGATTGCACCAGACAGAGCAGTTAACGTGATCGGTGAG
GTGAATCGACCTGGTCGTATAGAATGGTCAGATGAAATGAACTTCATGGGATTATTGGCACACGTCGGCGGCCCCACGCT
ACGCGCTGACACATCGAAAATTGAAGTCGTGACGGGTAGAAAGTTGGTTGTGTTTAATCTTGATGATTTCATCAGAAATG
GTGCGCCACGAGATCTGATGCCACAAATTCGCGCAGGCTCTATCGTCCGTGTCCACGACTTACCACAAGATCCGTCAGAC
AATAAATCTCAATGGGTACGTCAAAGCTCTGATGCTTCGATCTACATTTTTGGACAAGTGAATGCACCGGGTCGTTACCG
CTTCACCAGAGACATGCACTTTCTTGACATTTTGTCTGCAGCTGACGGGCCTACTAAGGATGCCGATATACACAACGTGC
GTGTAACGCACCGTGATAAAACCTACTCTAAAGTAAGCAAACTTAATTTATCGCTGTACTTCGAAACCGGTGACGAATCG
TTACTGCCAAATGTAACCACAGGTGACACTATTTATATCCCAGAGAAAGGTAAAAACTGGTTAGATACACCGAAAGAAGA
AACCGTTCGTGTACTTGGCGCGATTAACAACCCAGGACGTTATGTGTTCAACGACAACATGACCATTTTAGATATATTGG
CAGAGGCGGCGGGCCCTACTGATAACGCTTACGTAGAGAAAATTACCATTGTGAATATGTCTTGTTGCCAAGGTCAAGCT
CGTACCTTCGACCTTGTTGAATTCAGTAAAACAGCCAACATTTATAACCTACCAGTACTGCGCGCCGGTGACACTATCTA
CATCCCAGATCGCCGAGAGAGCTTTATGGAAAAAGCTCGTGTAGGTCTAGAAGACATACTACGTCTAACAACAATGATCG
TCTTAATAGGAGCTTTATAA

Upstream 100 bases:

>100_bases
CTCTTTTTGAAGGCGAATCAGACGGTACGCGTTTAACTAACCGCCGAGTGAGTATTGAAGTTATCTCCCCTAAAAATGCC
GAGAAAATGGGAGGTGGATT

Downstream 100 bases:

>100_bases
TGACTATTTCAGCAATCCAAGCAGAAGTAGAACAACTGTATCTAGCTTCTGAACTTAACGGACAGAAATCGATTTGCGTG
ACTGCCTGTCACTCAGGTGA

Product: periplasmic protein involved in polysaccharide export

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 699; Mature: 699

Protein sequence:

>699_residues
MKSLIAFIITLSLSFTSVVNANEEFSDAVQVGDLIQVNVPGESTLNKGFQVDKRGRITLPEVGAVFVAGYNSEQLNKVVL
ESLATAYKDLSNASVYVKEQQIIIYVQGYVEQPGEYTLALGSSIQMALYAAGGLRPGAQLDKLILKRGADKKEFNYKRFL
DSGDESTLPTLQSLDSLFVPASPLVGNIEQEFDAAKLANSGDSADSRNSIKVFGEVNAPGSFTYKENTDLVDVLMRSGGV
TRYASVEQIRVISNNTPTLFNLKRYLDSGDESLLPILRPGATIFVPKQEEEIKSGANTVYVMGEVAAPGAFEGKRDATFM
DILANAGGPTRFAESRQIRVIKADGRVLKFDLAAYTEGLPNSNPPSIKAGDAIFVPEKTDMNEKSWLKIAPDRAVNVIGE
VNRPGRIEWSDEMNFMGLLAHVGGPTLRADTSKIEVVTGRKLVVFNLDDFIRNGAPRDLMPQIRAGSIVRVHDLPQDPSD
NKSQWVRQSSDASIYIFGQVNAPGRYRFTRDMHFLDILSAADGPTKDADIHNVRVTHRDKTYSKVSKLNLSLYFETGDES
LLPNVTTGDTIYIPEKGKNWLDTPKEETVRVLGAINNPGRYVFNDNMTILDILAEAAGPTDNAYVEKITIVNMSCCQGQA
RTFDLVEFSKTANIYNLPVLRAGDTIYIPDRRESFMEKARVGLEDILRLTTMIVLIGAL

Sequences:

>Translated_699_residues
MKSLIAFIITLSLSFTSVVNANEEFSDAVQVGDLIQVNVPGESTLNKGFQVDKRGRITLPEVGAVFVAGYNSEQLNKVVL
ESLATAYKDLSNASVYVKEQQIIIYVQGYVEQPGEYTLALGSSIQMALYAAGGLRPGAQLDKLILKRGADKKEFNYKRFL
DSGDESTLPTLQSLDSLFVPASPLVGNIEQEFDAAKLANSGDSADSRNSIKVFGEVNAPGSFTYKENTDLVDVLMRSGGV
TRYASVEQIRVISNNTPTLFNLKRYLDSGDESLLPILRPGATIFVPKQEEEIKSGANTVYVMGEVAAPGAFEGKRDATFM
DILANAGGPTRFAESRQIRVIKADGRVLKFDLAAYTEGLPNSNPPSIKAGDAIFVPEKTDMNEKSWLKIAPDRAVNVIGE
VNRPGRIEWSDEMNFMGLLAHVGGPTLRADTSKIEVVTGRKLVVFNLDDFIRNGAPRDLMPQIRAGSIVRVHDLPQDPSD
NKSQWVRQSSDASIYIFGQVNAPGRYRFTRDMHFLDILSAADGPTKDADIHNVRVTHRDKTYSKVSKLNLSLYFETGDES
LLPNVTTGDTIYIPEKGKNWLDTPKEETVRVLGAINNPGRYVFNDNMTILDILAEAAGPTDNAYVEKITIVNMSCCQGQA
RTFDLVEFSKTANIYNLPVLRAGDTIYIPDRRESFMEKARVGLEDILRLTTMIVLIGAL
>Mature_699_residues
MKSLIAFIITLSLSFTSVVNANEEFSDAVQVGDLIQVNVPGESTLNKGFQVDKRGRITLPEVGAVFVAGYNSEQLNKVVL
ESLATAYKDLSNASVYVKEQQIIIYVQGYVEQPGEYTLALGSSIQMALYAAGGLRPGAQLDKLILKRGADKKEFNYKRFL
DSGDESTLPTLQSLDSLFVPASPLVGNIEQEFDAAKLANSGDSADSRNSIKVFGEVNAPGSFTYKENTDLVDVLMRSGGV
TRYASVEQIRVISNNTPTLFNLKRYLDSGDESLLPILRPGATIFVPKQEEEIKSGANTVYVMGEVAAPGAFEGKRDATFM
DILANAGGPTRFAESRQIRVIKADGRVLKFDLAAYTEGLPNSNPPSIKAGDAIFVPEKTDMNEKSWLKIAPDRAVNVIGE
VNRPGRIEWSDEMNFMGLLAHVGGPTLRADTSKIEVVTGRKLVVFNLDDFIRNGAPRDLMPQIRAGSIVRVHDLPQDPSD
NKSQWVRQSSDASIYIFGQVNAPGRYRFTRDMHFLDILSAADGPTKDADIHNVRVTHRDKTYSKVSKLNLSLYFETGDES
LLPNVTTGDTIYIPEKGKNWLDTPKEETVRVLGAINNPGRYVFNDNMTILDILAEAAGPTDNAYVEKITIVNMSCCQGQA
RTFDLVEFSKTANIYNLPVLRAGDTIYIPDRRESFMEKARVGLEDILRLTTMIVLIGAL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 76843; Mature: 76843

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLIAFIITLSLSFTSVVNANEEFSDAVQVGDLIQVNVPGESTLNKGFQVDKRGRITLP
CHHHHEEHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHCCCCEECCCCCEECC
EVGAVFVAGYNSEQLNKVVLESLATAYKDLSNASVYVKEQQIIIYVQGYVEQPGEYTLAL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEEEECCCCCEEEEE
GSSIQMALYAAGGLRPGAQLDKLILKRGADKKEFNYKRFLDSGDESTLPTLQSLDSLFVP
CCCEEEEEEECCCCCCCHHHHHHHHHCCCCCHHCCHHHHHCCCCCCCCCHHHHHHHHCCC
ASPLVGNIEQEFDAAKLANSGDSADSRNSIKVFGEVNAPGSFTYKENTDLVDVLMRSGGV
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHCCCC
TRYASVEQIRVISNNTPTLFNLKRYLDSGDESLLPILRPGATIFVPKQEEEIKSGANTVY
EEEECCEEEEEEECCCCCEEHHHHHHCCCCCCCCCEECCCCEEEECCCHHHHHCCCCEEE
VMGEVAAPGAFEGKRDATFMDILANAGGPTRFAESRQIRVIKADGRVLKFDLAAYTEGLP
EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEHHHHHCCCC
NSNPPSIKAGDAIFVPEKTDMNEKSWLKIAPDRAVNVIGEVNRPGRIEWSDEMNFMGLLA
CCCCCCCCCCCEEECCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEECCCCCHHHHHH
HVGGPTLRADTSKIEVVTGRKLVVFNLDDFIRNGAPRDLMPQIRAGSIVRVHDLPQDPSD
HCCCCEEECCCCEEEEEECCEEEEEECHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC
NKSQWVRQSSDASIYIFGQVNAPGRYRFTRDMHFLDILSAADGPTKDADIHNVRVTHRDK
CHHHHHHCCCCCEEEEEEEECCCCCEEEECCCHHHHHHHCCCCCCCCCCCEEEEEEECCC
TYSKVSKLNLSLYFETGDESLLPNVTTGDTIYIPEKGKNWLDTPKEETVRVLGAINNPGR
HHHHHHEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHEEEEECCCCCCC
YVFNDNMTILDILAEAAGPTDNAYVEKITIVNMSCCQGQARTFDLVEFSKTANIYNLPVL
EEEECCCCHHHHHHHHCCCCCCCEEEEEEEEEHHHCCCCCCEEEEEEHHCCCCEEECEEE
RAGDTIYIPDRRESFMEKARVGLEDILRLTTMIVLIGAL
ECCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSLIAFIITLSLSFTSVVNANEEFSDAVQVGDLIQVNVPGESTLNKGFQVDKRGRITLP
CHHHHEEHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHCCCCEECCCCCEECC
EVGAVFVAGYNSEQLNKVVLESLATAYKDLSNASVYVKEQQIIIYVQGYVEQPGEYTLAL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEEEECCCCCEEEEE
GSSIQMALYAAGGLRPGAQLDKLILKRGADKKEFNYKRFLDSGDESTLPTLQSLDSLFVP
CCCEEEEEEECCCCCCCHHHHHHHHHCCCCCHHCCHHHHHCCCCCCCCCHHHHHHHHCCC
ASPLVGNIEQEFDAAKLANSGDSADSRNSIKVFGEVNAPGSFTYKENTDLVDVLMRSGGV
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHCCCC
TRYASVEQIRVISNNTPTLFNLKRYLDSGDESLLPILRPGATIFVPKQEEEIKSGANTVY
EEEECCEEEEEEECCCCCEEHHHHHHCCCCCCCCCEECCCCEEEECCCHHHHHCCCCEEE
VMGEVAAPGAFEGKRDATFMDILANAGGPTRFAESRQIRVIKADGRVLKFDLAAYTEGLP
EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEHHHHHCCCC
NSNPPSIKAGDAIFVPEKTDMNEKSWLKIAPDRAVNVIGEVNRPGRIEWSDEMNFMGLLA
CCCCCCCCCCCEEECCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEECCCCCHHHHHH
HVGGPTLRADTSKIEVVTGRKLVVFNLDDFIRNGAPRDLMPQIRAGSIVRVHDLPQDPSD
HCCCCEEECCCCEEEEEECCEEEEEECHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC
NKSQWVRQSSDASIYIFGQVNAPGRYRFTRDMHFLDILSAADGPTKDADIHNVRVTHRDK
CHHHHHHCCCCCEEEEEEEECCCCCEEEECCCHHHHHHHCCCCCCCCCCCEEEEEEECCC
TYSKVSKLNLSLYFETGDESLLPNVTTGDTIYIPEKGKNWLDTPKEETVRVLGAINNPGR
HHHHHHEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHEEEEECCCCCCC
YVFNDNMTILDILAEAAGPTDNAYVEKITIVNMSCCQGQARTFDLVEFSKTANIYNLPVL
EEEECCCCHHHHHHHHCCCCCCCEEEEEEEEEHHHCCCCCCEEEEEEHHCCCCEEECEEE
RAGDTIYIPDRRESFMEKARVGLEDILRLTTMIVLIGAL
ECCCEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]