| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709513
Identifier: 218709513
GI number: 218709513
Start: 1656864
End: 1657553
Strand: Direct
Name: 218709513
Synonym: VS_1522
Alternate gene names: NA
Gene position: 1656864-1657553 (Clockwise)
Preceding gene: 218709512
Following gene: 218709514
Centisome position: 50.22
GC content: 41.74
Gene sequence:
>690_bases ATGACTATTTCAGCAATCCAAGCAGAAGTAGAACAACTGTATCTAGCTTCTGAACTTAACGGACAGAAATCGATTTGCGT GACTGCCTGTCACTCAGGTGACGGGGTAACCTCTGTTGCAACTGCATTAGCAGAACGTTTTCTCCTTGCTGGTCATTCTA CGCTTTATGTTGACCTCAACTTATACAATCCTGCTTTTAAAGATTTGAACATGTTGGAAGACAATCAACAGGGACAGTTA ATTGAACATGTCGAGTCTCATCGTACGTTTATCGGCGTCCCTGCTCCACAAATTGCATCAACGCAATTGGCTTATAAAGA TCCGACAACGTTACAAAAAGTGGTGAACAAATGGTTAGACAAATACGACAGAGTCATCATTGATACCTCACCGCTTCTCA ACATAAACAAAGGCAACATTCCGGCGCAATCTGTCGCGAGTGCTTGTGATAGTACATTGATGGTTGTCGCCTATGGTGAA ACCTCTAGTCACCACCTAGAACAAGCGAAAAAGCTGCTTGATGCGCAGAGTATCAATCTTATGGGTTGTGTGATGAACAT GAAACAAACACCTAGCTTTGCACAAGAGTTGGTAAGACAAATCAATCGCATGAAATTCCTTCCAACTAAACTTCGCGATA GCTTGGCCAATAAGCTTTACCAAAATGAGTTTTTAAATCTACCGATGTAA
Upstream 100 bases:
>100_bases ACATCCCAGATCGCCGAGAGAGCTTTATGGAAAAAGCTCGTGTAGGTCTAGAAGACATACTACGTCTAACAACAATGATC GTCTTAATAGGAGCTTTATA
Downstream 100 bases:
>100_bases CTTTTCTGCGCCACGATAGCTTTTTTGTACAACTATAGCTTTTGTGTGCAACTTAGTATTCTTGTGCAACTGCATGGCTA TCAGTAAATCCTGACAACCA
Product: putative capsular polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Capsular Polysaccharide Biosynthesis; Capsular Exopolysaccharide Family; Chromosome Partitioning ATPase; Capsular Polysaccharide Synthesis Protein; Capsular Polysaccharide Biosynthesis Protein
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MTISAIQAEVEQLYLASELNGQKSICVTACHSGDGVTSVATALAERFLLAGHSTLYVDLNLYNPAFKDLNMLEDNQQGQL IEHVESHRTFIGVPAPQIASTQLAYKDPTTLQKVVNKWLDKYDRVIIDTSPLLNINKGNIPAQSVASACDSTLMVVAYGE TSSHHLEQAKKLLDAQSINLMGCVMNMKQTPSFAQELVRQINRMKFLPTKLRDSLANKLYQNEFLNLPM
Sequences:
>Translated_229_residues MTISAIQAEVEQLYLASELNGQKSICVTACHSGDGVTSVATALAERFLLAGHSTLYVDLNLYNPAFKDLNMLEDNQQGQL IEHVESHRTFIGVPAPQIASTQLAYKDPTTLQKVVNKWLDKYDRVIIDTSPLLNINKGNIPAQSVASACDSTLMVVAYGE TSSHHLEQAKKLLDAQSINLMGCVMNMKQTPSFAQELVRQINRMKFLPTKLRDSLANKLYQNEFLNLPM >Mature_228_residues TISAIQAEVEQLYLASELNGQKSICVTACHSGDGVTSVATALAERFLLAGHSTLYVDLNLYNPAFKDLNMLEDNQQGQLI EHVESHRTFIGVPAPQIASTQLAYKDPTTLQKVVNKWLDKYDRVIIDTSPLLNINKGNIPAQSVASACDSTLMVVAYGET SSHHLEQAKKLLDAQSINLMGCVMNMKQTPSFAQELVRQINRMKFLPTKLRDSLANKLYQNEFLNLPM
Specific function: Unknown
COG id: COG0489
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25397; Mature: 25266
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISAIQAEVEQLYLASELNGQKSICVTACHSGDGVTSVATALAERFLLAGHSTLYVDLN CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE LYNPAFKDLNMLEDNQQGQLIEHVESHRTFIGVPAPQIASTQLAYKDPTTLQKVVNKWLD ECCCHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHCCEECCCCCHHHHHHHHHHHH KYDRVIIDTSPLLNINKGNIPAQSVASACDSTLMVVAYGETSSHHLEQAKKLLDAQSINL HHCEEEECCCCCEECCCCCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCHH MGCVMNMKQTPSFAQELVRQINRMKFLPTKLRDSLANKLYQNEFLNLPM HHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TISAIQAEVEQLYLASELNGQKSICVTACHSGDGVTSVATALAERFLLAGHSTLYVDLN CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE LYNPAFKDLNMLEDNQQGQLIEHVESHRTFIGVPAPQIASTQLAYKDPTTLQKVVNKWLD ECCCHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHCCEECCCCCHHHHHHHHHHHH KYDRVIIDTSPLLNINKGNIPAQSVASACDSTLMVVAYGETSSHHLEQAKKLLDAQSINL HHCEEEECCCCCEECCCCCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCHH MGCVMNMKQTPSFAQELVRQINRMKFLPTKLRDSLANKLYQNEFLNLPM HHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA