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The map label for this gene is pal [C]

Identifier: 218709511

GI number: 218709511

Start: 1653932

End: 1654768

Strand: Direct

Name: pal [C]

Synonym: VS_1520

Alternate gene names: 218709511

Gene position: 1653932-1654768 (Clockwise)

Preceding gene: 218709510

Following gene: 218709512

Centisome position: 50.13

GC content: 44.8

Gene sequence:

>837_bases
ATGAAAATACTGAAAAGCTACATAGCCCTTTCTCTGTCTGCTTTAGTTCTAGGTGGCTGTACTAGCTACCCTGAACAAGG
CACTGGCGGCTTGGCTGAAAGTTATGACTCTATTAACTACCAAAATTCCGACTTTTCTCCTGTCATGCCAGACGAACCTC
TTGGTCCTGAACACGGATTACGTTTTGATTGGCAACTGGCTAAATTACATCTTGATGCCTTGGTTCAAGAAGGCGCTCGC
TGGTGCTTCCCCGCTGCTGTTGTGCAAGCGATAGAAAAGCAAAATCGTATCGCTCGCGAACTACAAGGTGGCCTGCTTCT
AGATGCGGCAAACGACCTAGTCATTCAAAGAAAACGTTTAAACGAACTTGAAGTCCAACTGGACTATGTGACGTCACAAG
CACGGTGTGAACCACCAAAAAATGAAAACCAATTTAGAATGCAATTGTCGGTTATCGAACAGTTGTACGACCTGCTTAAT
GTTGACAACCAATTCGCGGAAAACTCTACTGAAGTCAATCCCAAATACATGGGACGACTTGCCGAGGCAACGACGCTACT
GAAAGAAAATAAATCTTTAGACCTTGTTGTTACCGGCCATGCTGATGCCACGGGTACTGAAGAATATAACGATGACTTGG
CACTTGGACGTGCTAAACAAGTCGAACGCTACCTAACGATTTTTGGCTTAGGTGTTCAGAGAATCAAAGCGGTATCTGTT
GGTGAAACGGTTCCTCTTTTTGAAGGCGAATCAGACGGTACGCGTTTAACTAACCGCCGAGTGAGTATTGAAGTTATCTC
CCCTAAAAATGCCGAGAAAATGGGAGGTGGATTATGA

Upstream 100 bases:

>100_bases
CTATCCCAGTAAATTCAAAAAATCCTACAAATTCATGAAGATCCACTAAGCTAGAAGTAACAAAACATAATAATAAAAAG
TAAAAACATAGGACGTTGGC

Downstream 100 bases:

>100_bases
AATCATTGATCGCTTTTATCATCACCCTATCGTTAAGCTTTACGAGTGTCGTAAATGCTAACGAAGAGTTTTCAGACGCG
GTTCAAGTCGGTGACCTTAT

Product: outer membrane protein

Products: NA

Alternate protein names: OmpA/MotB Domain Protein; OmpA/MotB Domain-Containing Protein; OmpA Family Protein; Outer Membrane Protein OmpA Family; Peptidoglycan-Associated Lipoprotein; OmpA/MotB Family Outer Membrane Protein; OmpA/MotB

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MKILKSYIALSLSALVLGGCTSYPEQGTGGLAESYDSINYQNSDFSPVMPDEPLGPEHGLRFDWQLAKLHLDALVQEGAR
WCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQLDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLN
VDNQFAENSTEVNPKYMGRLAEATTLLKENKSLDLVVTGHADATGTEEYNDDLALGRAKQVERYLTIFGLGVQRIKAVSV
GETVPLFEGESDGTRLTNRRVSIEVISPKNAEKMGGGL

Sequences:

>Translated_278_residues
MKILKSYIALSLSALVLGGCTSYPEQGTGGLAESYDSINYQNSDFSPVMPDEPLGPEHGLRFDWQLAKLHLDALVQEGAR
WCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQLDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLN
VDNQFAENSTEVNPKYMGRLAEATTLLKENKSLDLVVTGHADATGTEEYNDDLALGRAKQVERYLTIFGLGVQRIKAVSV
GETVPLFEGESDGTRLTNRRVSIEVISPKNAEKMGGGL
>Mature_278_residues
MKILKSYIALSLSALVLGGCTSYPEQGTGGLAESYDSINYQNSDFSPVMPDEPLGPEHGLRFDWQLAKLHLDALVQEGAR
WCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQLDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLN
VDNQFAENSTEVNPKYMGRLAEATTLLKENKSLDLVVTGHADATGTEEYNDDLALGRAKQVERYLTIFGLGVQRIKAVSV
GETVPLFEGESDGTRLTNRRVSIEVISPKNAEKMGGGL

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30758; Mature: 30758

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILKSYIALSLSALVLGGCTSYPEQGTGGLAESYDSINYQNSDFSPVMPDEPLGPEHGL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
RFDWQLAKLHLDALVQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRL
EEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHC
NELEVQLDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQFAENSTEVNPKYMGRL
CHHHEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHH
AEATTLLKENKSLDLVVTGHADATGTEEYNDDLALGRAKQVERYLTIFGLGVQRIKAVSV
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHEEECC
GETVPLFEGESDGTRLTNRRVSIEVISPKNAEKMGGGL
CCCCCCCCCCCCCCEEECCEEEEEEECCCCHHHCCCCC
>Mature Secondary Structure
MKILKSYIALSLSALVLGGCTSYPEQGTGGLAESYDSINYQNSDFSPVMPDEPLGPEHGL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
RFDWQLAKLHLDALVQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRL
EEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHC
NELEVQLDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQFAENSTEVNPKYMGRL
CHHHEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHH
AEATTLLKENKSLDLVVTGHADATGTEEYNDDLALGRAKQVERYLTIFGLGVQRIKAVSV
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHEEECC
GETVPLFEGESDGTRLTNRRVSIEVISPKNAEKMGGGL
CCCCCCCCCCCCCCEEECCEEEEEEECCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA