| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is yebT [H]
Identifier: 218709403
GI number: 218709403
Start: 1543734
End: 1546391
Strand: Reverse
Name: yebT [H]
Synonym: VS_1412
Alternate gene names: 218709403
Gene position: 1546391-1543734 (Counterclockwise)
Preceding gene: 218709404
Following gene: 218709402
Centisome position: 46.87
GC content: 46.01
Gene sequence:
>2658_bases ATGAACAACGATAACCAATCACAAACGTCATATTCACCAGAAGTCAGGAAAAACAAAGGTATTTCCCCTTTGTGGATCCT GCCGATACTAACCGTCGCATTAGCGGGTTGGTTGGTCATGAAATCGATACACGATGCAGGACAACGTGTGCAGATATATT TCTCAGATGCCGCAGGTTTAGTCGCAGGTCGAACGACAATTCGCTACCAAGGCTTAGAGGTAGGTATGGTGCGCGACATT ACCTTGTCCAAAGATTTATCGAGCATCTATGTCGATGCTGACATCTACCCAGAAGCGAAAAAGCTACTCTCAAAAGGCAC GCGTTTCTGGCTCGTAAAACCAACAGCAAGTTTATCTGGTATCTCAGGGTTAGATGCGCTTGTTTCAGGTAACTATATTG CTATCCATCCTAGCGAAACCAAGCAAGAACCAGAAACCGTTTTCCAGGCCTTAGAATCATCCCCTTCTGACTTATTGGCT TCGGAAGGCCTGAATATTTCATTGACGACCAAAGACCTGGGGGGTGTGTCTGTTGGCTCTCAGATCGTTTATCGTAAAAT TCCAATTGGTGAGGTTTACAACTATCAGCTAAACGACAACGCAAAATCCGTGACGATTCAAGCGGCGATTAAAGATGAAT ACAGCCACATCATTACCGACCAAAGCCGTTTTTGGAATGTCAGTGGCTTAGGTGCCAGTATCGGATTTTCTGGTGTCGAC GTACGCTTAGAAAGCCTCAGTGCTCTGCTTGGCGGTTCAATTGCGGTCGACTCTCCGGGAGAAGGTCAACCCGTAGAGAT GAACACCAAATTCAAACTGTACCCAGATTTGAAAACAGCCGGTCGTGGTATCTCGATCAAGATAGCCGTACCCGACGACA ACAAGATCAGTGCAACGGGCGCTCCGATCATGTATCGAGGCATCGAAATCGGTCAAATCACTGACCTATCTTTAAGCGAA GGGCGTGAAAACGTCGTGGCATCGGCTGCAATCCAACCGGCATTCAGTGACTTTTTAAATAGCGGCAGTCAATTCGTTTT AGAGGAAGCTGAACTATCACTTACTGGAATGAAAAATATTGCCAACTTAGTCACGGGGAACTTTCTAACCTTGGTTCCAG GTGAGGGTGAAAAAGCGCGTCGATTTACTGCGATTCGCAAAAATGAGTTCAGTCAGGAACAAGAAAAATCCGTTGCGATT CGCTTAACATCGAACAATTCATTCGGGTTAGATGTCGGTACACAGCTACTCTACAAAGGCATTGCTGTTGGCTCTATCAT CCAAGTAGGTTTAGTCGATGGTGTGGGTACTGGCTCTGATAAGCACGAAGTGTTTATGGATGCGCTTGTCGATAACGAAT ATGCTCACCTAATCAAAAGCCATAACCGTTTCTTTGTGACAGGCAGTGCGACTGCAGAGCTAACCGAATCTGGCTTAAGT GTGACGGTTCCACCGGCAAAACAACTTCTTACTGGCTCAATTAGCTTTGTTAGCGAAGGTCAGTCGAAAGCACGAACTGA CTATCAGCTTTTCCAAAGCAAATCGTTAGCAGAAATCGCCAAGTTTAATCAGTCTGGCTCAAAGACGCTTTCGTTGTTTG CGAGCGAGCTACCTTCAATTTCTAAAGGAAGCCCACTACTCTACCGCAACCTACAAGTGGGTAGCATTTCTGATTTTCAG CTTGTCGATGGTGGCGTGAGAATCAAAGTCACGATCGAAAATCGTTACACACACTTACTCAATGAACATACTGTTTTCTG GAACCGCTCAGGCGTTGAGATTGATGCGTCGCTATCGGGTATCAGTATTAAAGCAGCACCCGTTAAAACGCTTATTCAAG GCGGTATTGCTTTTGACTCCCTTCCGGGAATTGACAACAAACTCGGTGATGTGTGGAAACTTTATAAAGATTCGAAATCC GCGCGAAAATTTGGTCGTGCGATTACGATTACCTCTTCAGGCGATCAAGAAGTCAGCAAAGGCATGGCGATCAAATATCA AGGCGTCACCGTCGGTGAGGTTACCTTGGTGATTCCTAACTTCAATAAAGGCGGTATTGAAATTACTGCGCGTATTTTAC CTGAGTACGTAGACAAGATTGCCGTTGCGAAGAGTCACTTCTGGTTAGCAGAACCTGAAATCGGCCTCAATGGCATCAAA AACGTCTCTGCACTGCTCTCTAAGCACATCAACGTAGACCCGGGCAATGGTGACATAAATACGAAATTTAAGCTGAGCAA GGGGCCAGTGCAGCCTGAAGGCAAGATATTCCAGCTACAAAGCGAAACGCGAGGCTCGGTATCAGAAGGCACACCGATCC TATTTCGAGAACTAGAAATCGGTAGTGTTATCGATGTTCAACTAGGCGAGTTTGCTGATCGAATCATCTCTACGATTCAA ATCGAACCTGACTACGCGTATCTGATCCGCGCAAACACCGTGTTTTGGAACGTATCTGGTGTCGATGTCTCTATCGGTCT CTCTGGTGCAAACATCAAAGCTGGAACGGTAGACAGCTTGTTAAGAGGTGGTATTACATTCTCAACGCCACCGACCAATG AGCTTCAGCCAGTGGCAAACGAAGATCAGTCTTTCTATCTCTATCCTAAAGCCGAAGATGAGTGGAAATCATGGAGAACC GCAATTCCTCGCCCATAG
Upstream 100 bases:
>100_bases GTCGCTTTTGGCGTCGTGGTTGTTCTCACGATGCTAGCGGCGGAAAGCTTAGATCCTAGGCTAATTTGGGATAACTACAC CTCTAAAGATGAGTCAGTGA
Downstream 100 bases:
>100_bases AGTGAATCCTCAGAAGCTCCATGCAAATTAATACCGCTTGACGAAGAATAATTCATCATCAAAATGCAGCCATTCGGCTG CATTTTTGTTGTTTACTATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 885; Mature: 885
Protein sequence:
>885_residues MNNDNQSQTSYSPEVRKNKGISPLWILPILTVALAGWLVMKSIHDAGQRVQIYFSDAAGLVAGRTTIRYQGLEVGMVRDI TLSKDLSSIYVDADIYPEAKKLLSKGTRFWLVKPTASLSGISGLDALVSGNYIAIHPSETKQEPETVFQALESSPSDLLA SEGLNISLTTKDLGGVSVGSQIVYRKIPIGEVYNYQLNDNAKSVTIQAAIKDEYSHIITDQSRFWNVSGLGASIGFSGVD VRLESLSALLGGSIAVDSPGEGQPVEMNTKFKLYPDLKTAGRGISIKIAVPDDNKISATGAPIMYRGIEIGQITDLSLSE GRENVVASAAIQPAFSDFLNSGSQFVLEEAELSLTGMKNIANLVTGNFLTLVPGEGEKARRFTAIRKNEFSQEQEKSVAI RLTSNNSFGLDVGTQLLYKGIAVGSIIQVGLVDGVGTGSDKHEVFMDALVDNEYAHLIKSHNRFFVTGSATAELTESGLS VTVPPAKQLLTGSISFVSEGQSKARTDYQLFQSKSLAEIAKFNQSGSKTLSLFASELPSISKGSPLLYRNLQVGSISDFQ LVDGGVRIKVTIENRYTHLLNEHTVFWNRSGVEIDASLSGISIKAAPVKTLIQGGIAFDSLPGIDNKLGDVWKLYKDSKS ARKFGRAITITSSGDQEVSKGMAIKYQGVTVGEVTLVIPNFNKGGIEITARILPEYVDKIAVAKSHFWLAEPEIGLNGIK NVSALLSKHINVDPGNGDINTKFKLSKGPVQPEGKIFQLQSETRGSVSEGTPILFRELEIGSVIDVQLGEFADRIISTIQ IEPDYAYLIRANTVFWNVSGVDVSIGLSGANIKAGTVDSLLRGGITFSTPPTNELQPVANEDQSFYLYPKAEDEWKSWRT AIPRP
Sequences:
>Translated_885_residues MNNDNQSQTSYSPEVRKNKGISPLWILPILTVALAGWLVMKSIHDAGQRVQIYFSDAAGLVAGRTTIRYQGLEVGMVRDI TLSKDLSSIYVDADIYPEAKKLLSKGTRFWLVKPTASLSGISGLDALVSGNYIAIHPSETKQEPETVFQALESSPSDLLA SEGLNISLTTKDLGGVSVGSQIVYRKIPIGEVYNYQLNDNAKSVTIQAAIKDEYSHIITDQSRFWNVSGLGASIGFSGVD VRLESLSALLGGSIAVDSPGEGQPVEMNTKFKLYPDLKTAGRGISIKIAVPDDNKISATGAPIMYRGIEIGQITDLSLSE GRENVVASAAIQPAFSDFLNSGSQFVLEEAELSLTGMKNIANLVTGNFLTLVPGEGEKARRFTAIRKNEFSQEQEKSVAI RLTSNNSFGLDVGTQLLYKGIAVGSIIQVGLVDGVGTGSDKHEVFMDALVDNEYAHLIKSHNRFFVTGSATAELTESGLS VTVPPAKQLLTGSISFVSEGQSKARTDYQLFQSKSLAEIAKFNQSGSKTLSLFASELPSISKGSPLLYRNLQVGSISDFQ LVDGGVRIKVTIENRYTHLLNEHTVFWNRSGVEIDASLSGISIKAAPVKTLIQGGIAFDSLPGIDNKLGDVWKLYKDSKS ARKFGRAITITSSGDQEVSKGMAIKYQGVTVGEVTLVIPNFNKGGIEITARILPEYVDKIAVAKSHFWLAEPEIGLNGIK NVSALLSKHINVDPGNGDINTKFKLSKGPVQPEGKIFQLQSETRGSVSEGTPILFRELEIGSVIDVQLGEFADRIISTIQ IEPDYAYLIRANTVFWNVSGVDVSIGLSGANIKAGTVDSLLRGGITFSTPPTNELQPVANEDQSFYLYPKAEDEWKSWRT AIPRP >Mature_885_residues MNNDNQSQTSYSPEVRKNKGISPLWILPILTVALAGWLVMKSIHDAGQRVQIYFSDAAGLVAGRTTIRYQGLEVGMVRDI TLSKDLSSIYVDADIYPEAKKLLSKGTRFWLVKPTASLSGISGLDALVSGNYIAIHPSETKQEPETVFQALESSPSDLLA SEGLNISLTTKDLGGVSVGSQIVYRKIPIGEVYNYQLNDNAKSVTIQAAIKDEYSHIITDQSRFWNVSGLGASIGFSGVD VRLESLSALLGGSIAVDSPGEGQPVEMNTKFKLYPDLKTAGRGISIKIAVPDDNKISATGAPIMYRGIEIGQITDLSLSE GRENVVASAAIQPAFSDFLNSGSQFVLEEAELSLTGMKNIANLVTGNFLTLVPGEGEKARRFTAIRKNEFSQEQEKSVAI RLTSNNSFGLDVGTQLLYKGIAVGSIIQVGLVDGVGTGSDKHEVFMDALVDNEYAHLIKSHNRFFVTGSATAELTESGLS VTVPPAKQLLTGSISFVSEGQSKARTDYQLFQSKSLAEIAKFNQSGSKTLSLFASELPSISKGSPLLYRNLQVGSISDFQ LVDGGVRIKVTIENRYTHLLNEHTVFWNRSGVEIDASLSGISIKAAPVKTLIQGGIAFDSLPGIDNKLGDVWKLYKDSKS ARKFGRAITITSSGDQEVSKGMAIKYQGVTVGEVTLVIPNFNKGGIEITARILPEYVDKIAVAKSHFWLAEPEIGLNGIK NVSALLSKHINVDPGNGDINTKFKLSKGPVQPEGKIFQLQSETRGSVSEGTPILFRELEIGSVIDVQLGEFADRIISTIQ IEPDYAYLIRANTVFWNVSGVDVSIGLSGANIKAGTVDSLLRGGITFSTPPTNELQPVANEDQSFYLYPKAEDEWKSWRT AIPRP
Specific function: Unknown
COG id: COG3008
COG function: function code R; Paraquat-inducible protein B
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pqiB family [H]
Homologues:
Organism=Escherichia coli, GI87081984, Length=890, Percent_Identity=34.0449438202247, Blast_Score=551, Evalue=1e-158, Organism=Escherichia coli, GI1787184, Length=309, Percent_Identity=31.3915857605178, Blast_Score=163, Evalue=4e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003399 [H]
Pfam domain/function: PF02470 MCE [H]
EC number: NA
Molecular weight: Translated: 95592; Mature: 95592
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNDNQSQTSYSPEVRKNKGISPLWILPILTVALAGWLVMKSIHDAGQRVQIYFSDAAGL CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCE VAGRTTIRYQGLEVGMVRDITLSKDLSSIYVDADIYPEAKKLLSKGTRFWLVKPTASLSG EECCEEEEECCEEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHCCCEEEEEECCCCCCC ISGLDALVSGNYIAIHPSETKQEPETVFQALESSPSDLLASEGLNISLTTKDLGGVSVGS CCCCHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCC QIVYRKIPIGEVYNYQLNDNAKSVTIQAAIKDEYSHIITDQSRFWNVSGLGASIGFSGVD EEEEEECCCCCEEEEEECCCCCEEEEEEEEHHCHHHHCCCCHHEEEECCCCCCCCCCCCE VRLESLSALLGGSIAVDSPGEGQPVEMNTKFKLYPDLKTAGRGISIKIAVPDDNKISATG EEHHHHHHHHCCEEEECCCCCCCCEEECCEEEECCCHHHCCCCEEEEEEECCCCCEECCC APIMYRGIEIGQITDLSLSEGRENVVASAAIQPAFSDFLNSGSQFVLEEAELSLTGMKNI CCEEEECEEECCEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEHHHHHH ANLVTGNFLTLVPGEGEKARRFTAIRKNEFSQEQEKSVAIRLTSNNSFGLDVGTQLLYKG HHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHH IAVGSIIQVGLVDGVGTGSDKHEVFMDALVDNEYAHLIKSHNRFFVTGSATAELTESGLS HHHHHEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHCCCEEEEECCCHHHHHHCCCE VTVPPAKQLLTGSISFVSEGQSKARTDYQLFQSKSLAEIAKFNQSGSKTLSLFASELPSI EECCCHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCC SKGSPLLYRNLQVGSISDFQLVDGGVRIKVTIENRYTHLLNEHTVFWNRSGVEIDASLSG CCCCCEEEEEEECCCCCCEEEECCCEEEEEEECCCHHHHHCCCEEEECCCCCEEEECCCC ISIKAAPVKTLIQGGIAFDSLPGIDNKLGDVWKLYKDSKSARKFGRAITITSSGDQEVSK EEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHC GMAIKYQGVTVGEVTLVIPNFNKGGIEITARILPEYVDKIAVAKSHFWLAEPEIGLNGIK CEEEEECCEEEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHCCEEEECCCCCCCHHH NVSALLSKHINVDPGNGDINTKFKLSKGPVQPEGKIFQLQSETRGSVSEGTPILFRELEI HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECC GSVIDVQLGEFADRIISTIQIEPDYAYLIRANTVFWNVSGVDVSIGLSGANIKAGTVDSL CCEEEEHHHHHHHHHHHEEEECCCEEEEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHH LRGGITFSTPPTNELQPVANEDQSFYLYPKAEDEWKSWRTAIPRP HHCCEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCC >Mature Secondary Structure MNNDNQSQTSYSPEVRKNKGISPLWILPILTVALAGWLVMKSIHDAGQRVQIYFSDAAGL CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCE VAGRTTIRYQGLEVGMVRDITLSKDLSSIYVDADIYPEAKKLLSKGTRFWLVKPTASLSG EECCEEEEECCEEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHCCCEEEEEECCCCCCC ISGLDALVSGNYIAIHPSETKQEPETVFQALESSPSDLLASEGLNISLTTKDLGGVSVGS CCCCHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCC QIVYRKIPIGEVYNYQLNDNAKSVTIQAAIKDEYSHIITDQSRFWNVSGLGASIGFSGVD EEEEEECCCCCEEEEEECCCCCEEEEEEEEHHCHHHHCCCCHHEEEECCCCCCCCCCCCE VRLESLSALLGGSIAVDSPGEGQPVEMNTKFKLYPDLKTAGRGISIKIAVPDDNKISATG EEHHHHHHHHCCEEEECCCCCCCCEEECCEEEECCCHHHCCCCEEEEEEECCCCCEECCC APIMYRGIEIGQITDLSLSEGRENVVASAAIQPAFSDFLNSGSQFVLEEAELSLTGMKNI CCEEEECEEECCEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEHHHHHH ANLVTGNFLTLVPGEGEKARRFTAIRKNEFSQEQEKSVAIRLTSNNSFGLDVGTQLLYKG HHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHH IAVGSIIQVGLVDGVGTGSDKHEVFMDALVDNEYAHLIKSHNRFFVTGSATAELTESGLS HHHHHEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHCCCEEEEECCCHHHHHHCCCE VTVPPAKQLLTGSISFVSEGQSKARTDYQLFQSKSLAEIAKFNQSGSKTLSLFASELPSI EECCCHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCC SKGSPLLYRNLQVGSISDFQLVDGGVRIKVTIENRYTHLLNEHTVFWNRSGVEIDASLSG CCCCCEEEEEEECCCCCCEEEECCCEEEEEEECCCHHHHHCCCEEEECCCCCEEEECCCC ISIKAAPVKTLIQGGIAFDSLPGIDNKLGDVWKLYKDSKSARKFGRAITITSSGDQEVSK EEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHC GMAIKYQGVTVGEVTLVIPNFNKGGIEITARILPEYVDKIAVAKSHFWLAEPEIGLNGIK CEEEEECCEEEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHCCEEEECCCCCCCHHH NVSALLSKHINVDPGNGDINTKFKLSKGPVQPEGKIFQLQSETRGSVSEGTPILFRELEI HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECC GSVIDVQLGEFADRIISTIQIEPDYAYLIRANTVFWNVSGVDVSIGLSGANIKAGTVDSL CCEEEEHHHHHHHHHHHEEEECCCEEEEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHH LRGGITFSTPPTNELQPVANEDQSFYLYPKAEDEWKSWRTAIPRP HHCCEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]