Click here to switch to the map view.

The map label for this gene is bepC [H]

Identifier: 218709384

GI number: 218709384

Start: 1518258

End: 1519571

Strand: Reverse

Name: bepC [H]

Synonym: VS_1393

Alternate gene names: 218709384

Gene position: 1519571-1518258 (Counterclockwise)

Preceding gene: 218709386

Following gene: 218709383

Centisome position: 46.06

GC content: 43.3

Gene sequence:

>1314_bases
TTGAAATTGAACTGGATTAAAACGACTACATTAGGGTTGGCTATTGCACTCAGTTTACCGGCTAGCGCACAAACCTTAGA
GCAAGCCGTCGCGTTTACTTTAGAAAGTAACCCTGAAATCAAAGCGGCATATAACCAGTACGTTAGTCAACGTTACCTTA
ACGATGCTTCTGGTGGAGCTTACCGCCCGAGTATAGATTTAGACGGTGGCATTGGTTACGAATATACGGATTTGGCTACG
AATTCGAGCTCAACAGATCTAACGCGTAAAGAAGCAGCAATTACGTTGACACAACTCATTTGGGATGGCGCGAATACTTC
TAACGACATTGATCGTACCGCTGCTGATGCAGAGTCTGTCCGTTATCAATTACTATCTAGCGCTCAAGATATTGCACTGC
AAGTAACCAAAGTTTATCTTGATTCCGTTAAAGCTTATGAAGTGCTTACACTTTCTGAAAACAATCTCGCGACGCACAAA
AATATCTATATAGATATCAAGAAACGAGTTGATTCAGGCATTGGGTCTACAGCAGACATGTCTCAGGTGGAAGCTCGTAT
TGCAAAAGCTCATGGTAATTTGCTGGCAGCTCAAAATAATTTATTTGATGCCCATACTCAATTCAAACGCCTTGTTGGCC
AAGCCCCACTAGGCTTGGTATATCCACGTGCTGACGCAGGCTCTATTCCTTATACGATCGACGGTGCTTTGGCAAAAGCC
TTTAACCAACACCCGGTTATCAAAATTGCACAAGCTGACGTAGATTCAGCGAAGTTCCAATACAAGCAGTCGAAGAGTAC
CAACTACCCAACTGTTTCTTTTGAAGCCGCTCAAAGGTGGCGCGATGATGCAGGTGGTACGAAAGGCAACAGCGATGAAT
TTTCTGCGATGCTCCGCTTAAAGTACAATCTCTATAACGGTGGAGCCGATCAAGACCGTGCCGAAAGTGCCGCTTATCAA
CTCAACAAAGCAAAAGACCTACGTGAGAGTACTTACCGCAATGTAGAAGAAAGCTTACGCCTTTCATGGAGCGCTCTTGA
CTTAACCGTTCAGCAGAAAGATTTCTTGTCGGATCACGTAGACTCGGCTTCTGACACCGTTATCTCTTATGAAAAACAAT
ACCGAATTGGTAAGCGTACCCTTCTCGATCTACTTAACACTGAAAATGAACTCTTCGAAGCACGTAAGGGATTTTTAGAC
GCTAAGTACGATGTACAGTACGCAAAGTATAGAGTCATGAATGCTACAGGTAACCTATTAACAGGATTACGTGTAGAGAC
TCCACAAGAATGGAATGAAAAGGTAGAATATTAA

Upstream 100 bases:

>100_bases
ATGCTCATCGGGCATTCGTTATTTTTTTGGCGGTTCATCTAAATTTGATATATTCAAGCTTAAAAGCGACAAACTTAGGT
GATACTCCATTTTTGGGAGA

Downstream 100 bases:

>100_bases
TGAAGCTTCTCAAAACTATACTCCCACTATGCTTCGTGGTTGCTTCTGCCAACATCATGGCTGAAACAAATGATGAATTC
ACTTATCGTGCTCTTCCTAG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MKLNWIKTTTLGLAIALSLPASAQTLEQAVAFTLESNPEIKAAYNQYVSQRYLNDASGGAYRPSIDLDGGIGYEYTDLAT
NSSSTDLTRKEAAITLTQLIWDGANTSNDIDRTAADAESVRYQLLSSAQDIALQVTKVYLDSVKAYEVLTLSENNLATHK
NIYIDIKKRVDSGIGSTADMSQVEARIAKAHGNLLAAQNNLFDAHTQFKRLVGQAPLGLVYPRADAGSIPYTIDGALAKA
FNQHPVIKIAQADVDSAKFQYKQSKSTNYPTVSFEAAQRWRDDAGGTKGNSDEFSAMLRLKYNLYNGGADQDRAESAAYQ
LNKAKDLRESTYRNVEESLRLSWSALDLTVQQKDFLSDHVDSASDTVISYEKQYRIGKRTLLDLLNTENELFEARKGFLD
AKYDVQYAKYRVMNATGNLLTGLRVETPQEWNEKVEY

Sequences:

>Translated_437_residues
MKLNWIKTTTLGLAIALSLPASAQTLEQAVAFTLESNPEIKAAYNQYVSQRYLNDASGGAYRPSIDLDGGIGYEYTDLAT
NSSSTDLTRKEAAITLTQLIWDGANTSNDIDRTAADAESVRYQLLSSAQDIALQVTKVYLDSVKAYEVLTLSENNLATHK
NIYIDIKKRVDSGIGSTADMSQVEARIAKAHGNLLAAQNNLFDAHTQFKRLVGQAPLGLVYPRADAGSIPYTIDGALAKA
FNQHPVIKIAQADVDSAKFQYKQSKSTNYPTVSFEAAQRWRDDAGGTKGNSDEFSAMLRLKYNLYNGGADQDRAESAAYQ
LNKAKDLRESTYRNVEESLRLSWSALDLTVQQKDFLSDHVDSASDTVISYEKQYRIGKRTLLDLLNTENELFEARKGFLD
AKYDVQYAKYRVMNATGNLLTGLRVETPQEWNEKVEY
>Mature_437_residues
MKLNWIKTTTLGLAIALSLPASAQTLEQAVAFTLESNPEIKAAYNQYVSQRYLNDASGGAYRPSIDLDGGIGYEYTDLAT
NSSSTDLTRKEAAITLTQLIWDGANTSNDIDRTAADAESVRYQLLSSAQDIALQVTKVYLDSVKAYEVLTLSENNLATHK
NIYIDIKKRVDSGIGSTADMSQVEARIAKAHGNLLAAQNNLFDAHTQFKRLVGQAPLGLVYPRADAGSIPYTIDGALAKA
FNQHPVIKIAQADVDSAKFQYKQSKSTNYPTVSFEAAQRWRDDAGGTKGNSDEFSAMLRLKYNLYNGGADQDRAESAAYQ
LNKAKDLRESTYRNVEESLRLSWSALDLTVQQKDFLSDHVDSASDTVISYEKQYRIGKRTLLDLLNTENELFEARKGFLD
AKYDVQYAKYRVMNATGNLLTGLRVETPQEWNEKVEY

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=408, Percent_Identity=23.0392156862745, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 48509; Mature: 48509

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNWIKTTTLGLAIALSLPASAQTLEQAVAFTLESNPEIKAAYNQYVSQRYLNDASGGA
CCCEEEEHHHHHEEEEEECCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCCCC
YRPSIDLDGGIGYEYTDLATNSSSTDLTRKEAAITLTQLIWDGANTSNDIDRTAADAESV
CCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RYQLLSSAQDIALQVTKVYLDSVKAYEVLTLSENNLATHKNIYIDIKKRVDSGIGSTADM
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEHHHHCCCCCCCCHH
SQVEARIAKAHGNLLAAQNNLFDAHTQFKRLVGQAPLGLVYPRADAGSIPYTIDGALAKA
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECHHHHHH
FNQHPVIKIAQADVDSAKFQYKQSKSTNYPTVSFEAAQRWRDDAGGTKGNSDEFSAMLRL
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHEEEEE
KYNLYNGGADQDRAESAAYQLNKAKDLRESTYRNVEESLRLSWSALDLTVQQKDFLSDHV
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHEEEEEHHHHHHHHHC
DSASDTVISYEKQYRIGKRTLLDLLNTENELFEARKGFLDAKYDVQYAKYRVMNATGNLL
CCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEE
TGLRVETPQEWNEKVEY
ECCEECCCHHHHHCCCC
>Mature Secondary Structure
MKLNWIKTTTLGLAIALSLPASAQTLEQAVAFTLESNPEIKAAYNQYVSQRYLNDASGGA
CCCEEEEHHHHHEEEEEECCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCCCC
YRPSIDLDGGIGYEYTDLATNSSSTDLTRKEAAITLTQLIWDGANTSNDIDRTAADAESV
CCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RYQLLSSAQDIALQVTKVYLDSVKAYEVLTLSENNLATHKNIYIDIKKRVDSGIGSTADM
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEHHHHCCCCCCCCHH
SQVEARIAKAHGNLLAAQNNLFDAHTQFKRLVGQAPLGLVYPRADAGSIPYTIDGALAKA
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECHHHHHH
FNQHPVIKIAQADVDSAKFQYKQSKSTNYPTVSFEAAQRWRDDAGGTKGNSDEFSAMLRL
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHEEEEE
KYNLYNGGADQDRAESAAYQLNKAKDLRESTYRNVEESLRLSWSALDLTVQQKDFLSDHV
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHEEEEEHHHHHHHHHC
DSASDTVISYEKQYRIGKRTLLDLLNTENELFEARKGFLDAKYDVQYAKYRVMNATGNLL
CCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEE
TGLRVETPQEWNEKVEY
ECCEECCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]