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The map label for this gene is 218708997

Identifier: 218708997

GI number: 218708997

Start: 1039974

End: 1040516

Strand: Reverse

Name: 218708997

Synonym: VS_1003

Alternate gene names: NA

Gene position: 1040516-1039974 (Counterclockwise)

Preceding gene: 218708999

Following gene: 218708996

Centisome position: 31.54

GC content: 45.12

Gene sequence:

>543_bases
ATGAAACAACACCAAAATGGTTTTACTTTGATAGAGCTGGTCTCTGTCGTCGTTATTTTAGGCATACTTGCCGTTACCGC
AGCTCCTCGCTTTCTAAATTACCAACGCGATAGCCATGAAGCCATAGCTCAAGGTGCTTTTTCTTCTTTTCGAACTGCGG
TTAACCTTTACCACTCACAGTGGCTTGTTGATGGAGAGCCTGATTTTAATCAAGATGTCGATTATGGTGAAGGCAGCGTT
TATCCTTCATCGACTGGTTTTCCAATCGCTGTTGATCAACTACCGATTAATTCGGGGACTGCAATTAGAGGGAGTGACTG
CGCAAGGCTTTGGCGGGCGCTCATGAATACTGACCTCACCGTTAGAGATCACGGTAGCTCAGTATTCCCTTCAGAAGAAC
CGATCGTTGCTTGGTATACATCAGATCCAAGCTGCTATTACTACTACACTGATGGTTACTCGCTAGGCGAAGATTTACCA
AGGCTCAACTACTTCCCTCTAACCGGTGAAATAACTGTTACGTCAGATTCACCTAGCTCATAG

Upstream 100 bases:

>100_bases
CTTTAGTTCAATTCAGCAAACTAAACTTATTTCATTTTGAAAATTTAAGTTTGAAGTGTAAAAGAGTCACTGAAATATTT
AGTTACATATAGAATACATT

Downstream 100 bases:

>100_bases
TGACAAGCTTTTAACTTGCCCGTACAATCACGCGTCTTAATTTTCGATCCACTCAGTTTCGGTAAAGCAAATGCGAGTAA
TACTTGGCCCTATGGAGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: MSHA Pilin Protein MshB; MSHA Pilin Protein MshA; Type IV Pilin; Msha Pilin Protein Mshb; MshA-Like Protein; N-Terminal Methylation Domain-Containing Protein; Prepilin-Type Cleavage/Methylation; Msha Pilin Protein Msha; MshA Mannose-Sensitive Haemaglutinin; Methylation

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKQHQNGFTLIELVSVVVILGILAVTAAPRFLNYQRDSHEAIAQGAFSSFRTAVNLYHSQWLVDGEPDFNQDVDYGEGSV
YPSSTGFPIAVDQLPINSGTAIRGSDCARLWRALMNTDLTVRDHGSSVFPSEEPIVAWYTSDPSCYYYYTDGYSLGEDLP
RLNYFPLTGEITVTSDSPSS

Sequences:

>Translated_180_residues
MKQHQNGFTLIELVSVVVILGILAVTAAPRFLNYQRDSHEAIAQGAFSSFRTAVNLYHSQWLVDGEPDFNQDVDYGEGSV
YPSSTGFPIAVDQLPINSGTAIRGSDCARLWRALMNTDLTVRDHGSSVFPSEEPIVAWYTSDPSCYYYYTDGYSLGEDLP
RLNYFPLTGEITVTSDSPSS
>Mature_180_residues
MKQHQNGFTLIELVSVVVILGILAVTAAPRFLNYQRDSHEAIAQGAFSSFRTAVNLYHSQWLVDGEPDFNQDVDYGEGSV
YPSSTGFPIAVDQLPINSGTAIRGSDCARLWRALMNTDLTVRDHGSSVFPSEEPIVAWYTSDPSCYYYYTDGYSLGEDLP
RLNYFPLTGEITVTSDSPSS

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19890; Mature: 19890

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQHQNGFTLIELVSVVVILGILAVTAAPRFLNYQRDSHEAIAQGAFSSFRTAVNLYHSQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
WLVDGEPDFNQDVDYGEGSVYPSSTGFPIAVDQLPINSGTAIRGSDCARLWRALMNTDLT
EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHHHCCCCE
VRDHGSSVFPSEEPIVAWYTSDPSCYYYYTDGYSLGEDLPRLNYFPLTGEITVTSDSPSS
EEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCCCEEEEECCCCCC
>Mature Secondary Structure
MKQHQNGFTLIELVSVVVILGILAVTAAPRFLNYQRDSHEAIAQGAFSSFRTAVNLYHSQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
WLVDGEPDFNQDVDYGEGSVYPSSTGFPIAVDQLPINSGTAIRGSDCARLWRALMNTDLT
EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHHHCCCCE
VRDHGSSVFPSEEPIVAWYTSDPSCYYYYTDGYSLGEDLPRLNYFPLTGEITVTSDSPSS
EEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA