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The map label for this gene is ydaM [H]

Identifier: 218708995

GI number: 218708995

Start: 1037437

End: 1038903

Strand: Direct

Name: ydaM [H]

Synonym: VS_1001

Alternate gene names: 218708995

Gene position: 1037437-1038903 (Clockwise)

Preceding gene: 218708994

Following gene: 218708998

Centisome position: 31.44

GC content: 41.72

Gene sequence:

>1467_bases
ATGAAAGTAAATAGGCACTTTAGCCTTACCTTTGTCTTCGGCTTTCCCGCTGTGATCGCGACCATGTTACTTGGGCTGAT
AGGAAAAAATTATTTTGATGCGGTTGAAAAAGACATCAGCAGTGAGTTTCAGCGTATTGAAGAAGTGTTTAAACGAACGA
CCAAAATTGTTACCGCTCTAGATTACAGCTTCTCTAATTACTACAAATCAGGAAACCCTCTTTTCCTTGATCACAATAAG
CAGGTGGTTGACGGTATTTGCCGTATTTGGCCTATCGACGTATTACTTCTTGCTGACGGAAAAACCGCAGATATCCCCTC
TGTCGATATCGACTATATGTTGGTTGGTCAAGAATCCCTTTGCAATGAAACCAGTGATAGCTATAAAAGTGCGTCAGAGA
AAATTGCTCTCGCGCCAATTCTTTCATTTTTGTCCCAGCTTGATGAATATCACAACGGCGTACACTTTATAGATACTCGT
GGTTATGTGATCTCTTCGCCAGAAGACTTTGCTAAAGAGCTAGGGAAAGAACTACTTTCGACCATAAAAAGCCGCCCGTA
TTGGCAAAGAACCGCCAACAATCCAGAACAATTGACTTTAACGGGTCCTGCGTATCGATTTGACTCTCTTGACCGTATGA
TAAGCATGACGATTCCGGTGTTTCATAAGGGGATACATCAAGGAATGCTTTCTGTTGAGATTGACGCCAGTAAATTGCTT
GCGAGTTCGAATGAGCACTTAGCCGGTAGAATCGATATTATTGATACCACCTTGGTTAATCCGGTTGATAGCGCTACTTT
CTATCACGCGATACAACTGGAAGGAGTCACCTCTCATCACGCGATGTACTACGAATTAGATTTTGCCAAAGAGGTCGAGC
ACTTTTTTGTCTACGAGAAAGACAGTCTGATTGTCGCTATCATCGTATATCTATTCTCTGTAACGCTCTTTTTCTTCGTT
AACTCCAATATTGAACGTGGTTACTTCAAAGAACTAGCAGCTAAAGATCCAATGACCGGGCTGCTAAATCGCAGAGGATT
GGAAGCTTTTTGGCGCAGTGTGGAGCATGACCAGTTATTCGCCTTGACTGTATTTGACATTGATAATTTCAAGTTGATTA
ATGATACCTTTGGGCATGACAAAGGGGATGATGTTATTCGCTACATGTCCCGCCAGATAAGTAATAGCATTCGAAGTAGT
GATGTAGCAGCAAGGTTTGGTGGTGAAGAGTTTGTCGTTTATCTTAAAGGTGATGATCGCGAAACGTTAATGAGGACATT
AGAGCGTGTTAAAAATGCTGTCTGTGCGAACTCAGCTAACATTGTACCTAATGGTTTTACTGTCTCTGGTGGTGTTTGTA
TTACTGAAGTTGAGCATAACAACCTAAGCTTTGAAGAGATATTCAAACACGCGGATGAAAAGTTGTACGTGGCTAAGACG
ACAGGTAAAGACCGCATCGTATTTTAA

Upstream 100 bases:

>100_bases
TTAATACCAACTTACATTATTTTACATCGAGAGGGCTGTCGATTAATGTCATAATATTAATGGAACTAATGAAAATAACT
GAGCGCTAAGAGCACATTCT

Downstream 100 bases:

>100_bases
CCACGCTATTGAACTTCTATGCTAGAGAATAAGGGGAACTAACTCACACAGTTTGGCGATGTTCCTTTTGATAACGCTGA
AGGCGCTCCACAATAGGTGG

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MKVNRHFSLTFVFGFPAVIATMLLGLIGKNYFDAVEKDISSEFQRIEEVFKRTTKIVTALDYSFSNYYKSGNPLFLDHNK
QVVDGICRIWPIDVLLLADGKTADIPSVDIDYMLVGQESLCNETSDSYKSASEKIALAPILSFLSQLDEYHNGVHFIDTR
GYVISSPEDFAKELGKELLSTIKSRPYWQRTANNPEQLTLTGPAYRFDSLDRMISMTIPVFHKGIHQGMLSVEIDASKLL
ASSNEHLAGRIDIIDTTLVNPVDSATFYHAIQLEGVTSHHAMYYELDFAKEVEHFFVYEKDSLIVAIIVYLFSVTLFFFV
NSNIERGYFKELAAKDPMTGLLNRRGLEAFWRSVEHDQLFALTVFDIDNFKLINDTFGHDKGDDVIRYMSRQISNSIRSS
DVAARFGGEEFVVYLKGDDRETLMRTLERVKNAVCANSANIVPNGFTVSGGVCITEVEHNNLSFEEIFKHADEKLYVAKT
TGKDRIVF

Sequences:

>Translated_488_residues
MKVNRHFSLTFVFGFPAVIATMLLGLIGKNYFDAVEKDISSEFQRIEEVFKRTTKIVTALDYSFSNYYKSGNPLFLDHNK
QVVDGICRIWPIDVLLLADGKTADIPSVDIDYMLVGQESLCNETSDSYKSASEKIALAPILSFLSQLDEYHNGVHFIDTR
GYVISSPEDFAKELGKELLSTIKSRPYWQRTANNPEQLTLTGPAYRFDSLDRMISMTIPVFHKGIHQGMLSVEIDASKLL
ASSNEHLAGRIDIIDTTLVNPVDSATFYHAIQLEGVTSHHAMYYELDFAKEVEHFFVYEKDSLIVAIIVYLFSVTLFFFV
NSNIERGYFKELAAKDPMTGLLNRRGLEAFWRSVEHDQLFALTVFDIDNFKLINDTFGHDKGDDVIRYMSRQISNSIRSS
DVAARFGGEEFVVYLKGDDRETLMRTLERVKNAVCANSANIVPNGFTVSGGVCITEVEHNNLSFEEIFKHADEKLYVAKT
TGKDRIVF
>Mature_488_residues
MKVNRHFSLTFVFGFPAVIATMLLGLIGKNYFDAVEKDISSEFQRIEEVFKRTTKIVTALDYSFSNYYKSGNPLFLDHNK
QVVDGICRIWPIDVLLLADGKTADIPSVDIDYMLVGQESLCNETSDSYKSASEKIALAPILSFLSQLDEYHNGVHFIDTR
GYVISSPEDFAKELGKELLSTIKSRPYWQRTANNPEQLTLTGPAYRFDSLDRMISMTIPVFHKGIHQGMLSVEIDASKLL
ASSNEHLAGRIDIIDTTLVNPVDSATFYHAIQLEGVTSHHAMYYELDFAKEVEHFFVYEKDSLIVAIIVYLFSVTLFFFV
NSNIERGYFKELAAKDPMTGLLNRRGLEAFWRSVEHDQLFALTVFDIDNFKLINDTFGHDKGDDVIRYMSRQISNSIRSS
DVAARFGGEEFVVYLKGDDRETLMRTLERVKNAVCANSANIVPNGFTVSGGVCITEVEHNNLSFEEIFKHADEKLYVAKT
TGKDRIVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=163, Percent_Identity=38.0368098159509, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=34.5679012345679, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=36.969696969697, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=36.3636363636364, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87081974, Length=190, Percent_Identity=30.5263157894737, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=32.2981366459627, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787541, Length=156, Percent_Identity=29.4871794871795, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 55290; Mature: 55290

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNRHFSLTFVFGFPAVIATMLLGLIGKNYFDAVEKDISSEFQRIEEVFKRTTKIVTAL
CCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYSFSNYYKSGNPLFLDHNKQVVDGICRIWPIDVLLLADGKTADIPSVDIDYMLVGQESL
HHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEECCHHH
CNETSDSYKSASEKIALAPILSFLSQLDEYHNGVHFIDTRGYVISSPEDFAKELGKELLS
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCHHHHHHHHHHHHHH
TIKSRPYWQRTANNPEQLTLTGPAYRFDSLDRMISMTIPVFHKGIHQGMLSVEIDASKLL
HHHCCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHH
ASSNEHLAGRIDIIDTTLVNPVDSATFYHAIQLEGVTSHHAMYYELDFAKEVEHFFVYEK
HCCCCCCEEEEEEEEHHHCCCCCCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHEEECC
DSLIVAIIVYLFSVTLFFFVNSNIERGYFKELAAKDPMTGLLNRRGLEAFWRSVEHDQLF
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCEE
ALTVFDIDNFKLINDTFGHDKGDDVIRYMSRQISNSIRSSDVAARFGGEEFVVYLKGDDR
EEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
ETLMRTLERVKNAVCANSANIVPNGFTVSGGVCITEVEHNNLSFEEIFKHADEKLYVAKT
HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCCCHHHHHHCCCCEEEEEEE
TGKDRIVF
CCCCCCCC
>Mature Secondary Structure
MKVNRHFSLTFVFGFPAVIATMLLGLIGKNYFDAVEKDISSEFQRIEEVFKRTTKIVTAL
CCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DYSFSNYYKSGNPLFLDHNKQVVDGICRIWPIDVLLLADGKTADIPSVDIDYMLVGQESL
HHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEECCHHH
CNETSDSYKSASEKIALAPILSFLSQLDEYHNGVHFIDTRGYVISSPEDFAKELGKELLS
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCHHHHHHHHHHHHHH
TIKSRPYWQRTANNPEQLTLTGPAYRFDSLDRMISMTIPVFHKGIHQGMLSVEIDASKLL
HHHCCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHH
ASSNEHLAGRIDIIDTTLVNPVDSATFYHAIQLEGVTSHHAMYYELDFAKEVEHFFVYEK
HCCCCCCEEEEEEEEHHHCCCCCCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHEEECC
DSLIVAIIVYLFSVTLFFFVNSNIERGYFKELAAKDPMTGLLNRRGLEAFWRSVEHDQLF
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCEE
ALTVFDIDNFKLINDTFGHDKGDDVIRYMSRQISNSIRSSDVAARFGGEEFVVYLKGDDR
EEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
ETLMRTLERVKNAVCANSANIVPNGFTVSGGVCITEVEHNNLSFEEIFKHADEKLYVAKT
HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCCCHHHHHHCCCCEEEEEEE
TGKDRIVF
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]