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The map label for this gene is rnfB

Identifier: 218708973

GI number: 218708973

Start: 1010644

End: 1011237

Strand: Reverse

Name: rnfB

Synonym: VS_0977

Alternate gene names: 218708973

Gene position: 1011237-1010644 (Counterclockwise)

Preceding gene: 218708974

Following gene: 218708972

Centisome position: 30.65

GC content: 47.31

Gene sequence:

>594_bases
ATGAGCACCATCTTAATTGCAATCATTGCACTCGCCGTTTTAGCCGCCGTTTTTGGCGCTATCTTAGGCTTTGCTTCTAT
CCGCTTTAAAGTAGAAGCCGATCCGATCGTTGATCAAATCGACACTATATTGCCGCAAACTCAGTGTGGCCAGTGTGGCT
ACCCAGGTTGTCGCCCATACGCAGAGGCGATCGCGAACGGAGATAAGATCAACAAATGTCCTCCCGGCGGCCAAGCAACC
ATTGAGAAGCTTGCAGACTTAATGGGCGTAGAAGTTGAAGACTCCGCTCATGACTTAGATAACAAAGTAAAAACCGTTGC
CTTCATTCATGAAGATATGTGTATTGGCTGTACCAAATGCATTCAAGCCTGCCCTGTCGACGCCATTGTTGGTGGCACCA
AGGCACTCCACACAGTAATCAAAGATGAATGTACAGGTTGTGATCTATGTGTCGCACCGTGCCCTACTGACTGTATCGAA
ATGATTCCAGTGGCAACAACGACTGAAAATTGGAAATGGCAGATGAACATCATTCCTGTTACTGATATCACTAACCAAGC
GACTGATGCCACTGCATCAGAGCCTAAGGCGTAG

Upstream 100 bases:

>100_bases
CTGATGTTCCAATGCCCTTCAAAGGCGCATCGATTGCGATGATCACAGCAGGCCTAATGTCTCTGGCATTTATGGGCTTT
ACTGGGTTGGTGAAATAAGC

Downstream 100 bases:

>100_bases
GGTTAGTATGATCTCTTTAATTGAACAAATTCGCACGGGCTCTATTTGGAACTTCCCAGGCGGCGTGCACCCTGCTGAAA
ACAAGAAACAGTCCAATACC

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSTILIAIIALAVLAAVFGAILGFASIRFKVEADPIVDQIDTILPQTQCGQCGYPGCRPYAEAIANGDKINKCPPGGQAT
IEKLADLMGVEVEDSAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE
MIPVATTTENWKWQMNIIPVTDITNQATDATASEPKA

Sequences:

>Translated_197_residues
MSTILIAIIALAVLAAVFGAILGFASIRFKVEADPIVDQIDTILPQTQCGQCGYPGCRPYAEAIANGDKINKCPPGGQAT
IEKLADLMGVEVEDSAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE
MIPVATTTENWKWQMNIIPVTDITNQATDATASEPKA
>Mature_196_residues
STILIAIIALAVLAAVFGAILGFASIRFKVEADPIVDQIDTILPQTQCGQCGYPGCRPYAEAIANGDKINKCPPGGQATI
EKLADLMGVEVEDSAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEM
IPVATTTENWKWQMNIIPVTDITNQATDATASEPKA

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=186, Percent_Identity=60.752688172043, Blast_Score=233, Evalue=8e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_VIBSL (B7VLT8)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416594.1
- ProteinModelPortal:   B7VLT8
- SMR:   B7VLT8
- GeneID:   7160571
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0977
- HOGENOM:   HBG549899
- OMA:   KFKVEGD
- ProtClustDB:   PRK05113
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- InterPro:   IPR012285
- Gene3D:   G3DSA:1.10.1060.10
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 20852; Mature: 20721

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
6.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTILIAIIALAVLAAVFGAILGFASIRFKVEADPIVDQIDTILPQTQCGQCGYPGCRPY
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKINKCPPGGQATIEKLADLMGVEVEDSAHDLDNKVKTVAFIHEDMCIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPVATTTENWKWQMNIIPV
HHHCCCHHHHCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCCCCCCCCEEEEEEEEC
TDITNQATDATASEPKA
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STILIAIIALAVLAAVFGAILGFASIRFKVEADPIVDQIDTILPQTQCGQCGYPGCRPY
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKINKCPPGGQATIEKLADLMGVEVEDSAHDLDNKVKTVAFIHEDMCIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPVATTTENWKWQMNIIPV
HHHCCCHHHHCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCCCCCCCCEEEEEEEEC
TDITNQATDATASEPKA
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA