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The map label for this gene is rnfC [H]

Identifier: 218708972

GI number: 218708972

Start: 1009842

End: 1010672

Strand: Reverse

Name: rnfC [H]

Synonym: VS_0976

Alternate gene names: 218708972

Gene position: 1010672-1009842 (Counterclockwise)

Preceding gene: 218708973

Following gene: 218708971

Centisome position: 30.63

GC content: 45.73

Gene sequence:

>831_bases
ATGCCACTGCATCAGAGCCTAAGGCGTAGGGTTAGTATGATCTCTTTAATTGAACAAATTCGCACGGGCTCTATTTGGAA
CTTCCCAGGCGGCGTGCACCCTGCTGAAAACAAGAAACAGTCCAATACCACTGACATCGTTCATGCAAGGCTTCCTGAGG
AAATCGTTCTTCCTGTAAAACAGCACATCGGTAAGCCAGGTAACTTATTGTTTGCTGTCGGTGATGCCGTACTCAAAGGT
CAGCAACTGACGGCCTTAGAGACTGGCTTTACTTTGCCAGTACATGCACCAACATCGGGTGTGATTACCGCTATCGAACC
ACGAACCACCGCTCACCCTTCAGGCTTGAGCGACGTGTGCGTGGTTATTAAACCTGATGGTTTAGACGCTTGGATTGAAA
AAAATCCAGTTGAAGATTTCTCGACAAAGACCTCTGACGAACTGCTTGATGTGATTCGCCAAGCTGGTATTTCAGGCATG
GGCGGCGCAGGCTTCCCTACGGCTAAGAAACTTCAATCAGGTCTAGGTCGCACTGATATTTTGATCGTCAATGCTGCGGA
ATGTGAACCTTACATCACCTCTGATGACAAGTTGCTTCAAGAACATGCCGACGAAGTATTAAAAGGCATCGAAGTGGTTG
AACACATTCTTCAACCAAAGCTGACGGTTATCGGCATTGAAGACAACAAACCAGACGCGATAAAAGCACTTGAGATTGCA
GCGAAAGACAAAGATATCGTCATTCGTGTTATCCCAACTAAATACCCTTCAGGTGGTGAGAAACAGCTGATAAAGATCCT
TACTAATAAAGAGTGTAAGATCCTTCTATAA

Upstream 100 bases:

>100_bases
ACTGACTGTATCGAAATGATTCCAGTGGCAACAACGACTGAAAATTGGAAATGGCAGATGAACATCATTCCTGTTACTGA
TATCACTAACCAAGCGACTG

Downstream 100 bases:

>100_bases
GAGGTTCCGGCTGGCGGCATCCCTGCAGACATTGGTGTTTTGGTTCAGAACGTCGGCTCTCTTTACTCGATTAAGCGAGC
GGTAATTGACGGCGAACCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MPLHQSLRRRVSMISLIEQIRTGSIWNFPGGVHPAENKKQSNTTDIVHARLPEEIVLPVKQHIGKPGNLLFAVGDAVLKG
QQLTALETGFTLPVHAPTSGVITAIEPRTTAHPSGLSDVCVVIKPDGLDAWIEKNPVEDFSTKTSDELLDVIRQAGISGM
GGAGFPTAKKLQSGLGRTDILIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA
AKDKDIVIRVIPTKYPSGGEKQLIKILTNKECKILL

Sequences:

>Translated_276_residues
MPLHQSLRRRVSMISLIEQIRTGSIWNFPGGVHPAENKKQSNTTDIVHARLPEEIVLPVKQHIGKPGNLLFAVGDAVLKG
QQLTALETGFTLPVHAPTSGVITAIEPRTTAHPSGLSDVCVVIKPDGLDAWIEKNPVEDFSTKTSDELLDVIRQAGISGM
GGAGFPTAKKLQSGLGRTDILIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA
AKDKDIVIRVIPTKYPSGGEKQLIKILTNKECKILL
>Mature_275_residues
PLHQSLRRRVSMISLIEQIRTGSIWNFPGGVHPAENKKQSNTTDIVHARLPEEIVLPVKQHIGKPGNLLFAVGDAVLKGQ
QLTALETGFTLPVHAPTSGVITAIEPRTTAHPSGLSDVCVVIKPDGLDAWIEKNPVEDFSTKTSDELLDVIRQAGISGMG
GAGFPTAKKLQSGLGRTDILIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIAA
KDKDIVIRVIPTKYPSGGEKQLIKILTNKECKILL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=260, Percent_Identity=53.0769230769231, Blast_Score=281, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 29907; Mature: 29776

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLHQSLRRRVSMISLIEQIRTGSIWNFPGGVHPAENKKQSNTTDIVHARLPEEIVLPVK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCHHHHHHHH
QHIGKPGNLLFAVGDAVLKGQQLTALETGFTLPVHAPTSGVITAIEPRTTAHPSGLSDVC
HHCCCCCCEEEEECHHHHCCCCEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEE
VVIKPDGLDAWIEKNPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKLQSGLGRTDI
EEEECCCCCHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEE
LIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA
EEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
AKDKDIVIRVIPTKYPSGGEKQLIKILTNKECKILL
CCCCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEEC
>Mature Secondary Structure 
PLHQSLRRRVSMISLIEQIRTGSIWNFPGGVHPAENKKQSNTTDIVHARLPEEIVLPVK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCHHHHHHHH
QHIGKPGNLLFAVGDAVLKGQQLTALETGFTLPVHAPTSGVITAIEPRTTAHPSGLSDVC
HHCCCCCCEEEEECHHHHCCCCEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEE
VVIKPDGLDAWIEKNPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKLQSGLGRTDI
EEEECCCCCHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEE
LIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA
EEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
AKDKDIVIRVIPTKYPSGGEKQLIKILTNKECKILL
CCCCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]