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The map label for this gene is rnfC [H]

Identifier: 218708971

GI number: 218708971

Start: 1007811

End: 1009802

Strand: Reverse

Name: rnfC [H]

Synonym: VS_0975

Alternate gene names: 218708971

Gene position: 1009802-1007811 (Counterclockwise)

Preceding gene: 218708972

Following gene: 218708970

Centisome position: 30.61

GC content: 48.39

Gene sequence:

>1992_bases
TTGGTTCAGAACGTCGGCTCTCTTTACTCGATTAAGCGAGCGGTAATTGACGGCGAACCTGTGGTTAACCGCGTTGTGAC
ATTAACCGGTAAAACCTTTAAGCAACCTCGTAATGTTTGGGCGCTATTAGGTACACCAGTACACGAGTTACTTGAAGAGT
TTGGCTACAAAGCCGATAAAAAACTGCCGCGTTTGATTTTGGGTGGCCCTATGATGGGCTTCACCTTGCCACATGCCAAT
GTGCCAATCACTAAAACGTCGAACTGTATTTTAGCGCCAACGCGTCGTGAGATCTCTCCAAGCACTTACGAGATGGAATG
TATTCGTTGTAGCGCGTGTGCCGAGGCTTGCCCCGCATCACTTCTTCCTCAACAACTGCAATGGCATGCGAAAGCCAACG
AGTTGGATAAGTGTGAAGAACTGAATATTAAAGACTGTATTGAATGCGGTGCTTGTGCATTTGTCTGCCCAAGTGAAATT
CCTCTTGTTCAGTACTACCGCCAAGCAAAAGCTGAGATCAAAACTCGAAAAGATGAAGCCGCTGCAGCAGAGCGCGCCAA
GATTCGTTTCGAAGAGAAAAACGCTCGTATGGAGCGTGACAAAGCAGAACGTGAAAACCGCTTCAAAAAAGCCGCTGATA
ACCGTCGTAAAGACATGAAATCAGCCGACGGTGATGATGCGATTGCAGCTGCGATTGCTCGCGTTAAAGCGCAAAAAGCC
GCGGCAGACCAAGCTCCTAATGCGGAACCAGCGGTGAAACCTGCGGTTGCGGCTGCGATTGCCAAGGCAAAAGCAAAACA
AGCTGCGGCTCAGAAAGCGGATAGCGCTGAACCAGACAATTCTGAAATGTCGAAACTGCGTGAAGAACGTAAACGACAAG
CTCGAGAGCGCAAGGCACAACAAGCAGCAACTGATGCTCCTGCAGAAAGCTCTGGTGATGGCAAAAAAGACGCTGTTGCT
GCAGCTATCGCTCGTGCTAAAGCGAAGAAAGCTCAACAAGCAGAATCGGCTTCTAACGCTCCGGCTGAAAGTACTGGCGA
TGCCAAGAAAGATGCGGTCGCTGCAGCTATAGCTCGCGCTAAAGCCAAGAAAGCACAACAAACAGAATCAGCTTCTGAAG
CTCCGGTTGAAAAATCAGGTGACGCTAAGAAAGATGCTGTCGCTGCTGCAATAGCTCGTGCTAAAGCCAAGAAGGCTCAA
CAAGCTGAATCTTCTACTCCAACAGCAAGCGAAGCTCCGGTTAAAAGTTCTGGCGATGCTAAGAAAGATGCTGTTGTTGC
AGCTATCGCTCGTGCTAAAGCGAAGAAAGCACAACAAGCAGAATCAGCTGCTCAAACCGAAAGTGAAGCTCCAGCTAAAA
GCTCTGGCGATGCCAAGAAAGATGCTGTCGCTGCGGCTATTGCTCGCGCTAAAGCCAAGAAGGCTCAACAAGCTGAATCT
TCTACTCCAACAGCAAGCGAAGCTCCGGTTAAAAGTTCTGGCGATGCTAAGAAAGATGCCGTCGCTGCAGCCATTGCTCG
CGCTAAAGCCAAAAAAGCACAACAAGCTGAATCTTCTACTCGAACAGAAAGCGAAGCTTCAGCTGAAAGCTCTGGTGATG
CCAAAAAAGATGCAGTCGCTGCCGCTATTGCTCGCGCCAAAGCGAAGAAGGCGCAGCAAGCTAAACAGGTCGAAACAAAA
GCAACCACTCCTGAACCTTTAGTTGAAATTGAAGTAGAAGCTGAAATTCAATCAGAACCAGTGGATCCTAAAAAAGCTGC
TGTTACCGCTGCAATAGCTCGCGCTAAAGCAAGAAAGGCACAACAAGCGAAACAGGAAGAGTCAGCAGAAACACCTGAAT
CTGTGGTTGAACCTGTAGTTGAATTAAAGGCTGAAACTCAACAAGAACCAGTCGACCCTAAAAAAGCAGCGGTTGCTGCA
GCGATTGCTCGTGCTAAAGCAAGAAAGGCGCAGCAAGAGCAAGACAAAAAGAATAATGAGGAGAAAGAGTAG

Upstream 100 bases:

>100_bases
AGGTGGTGAGAAACAGCTGATAAAGATCCTTACTAATAAAGAGTGTAAGATCCTTCTATAAGAGGTTCCGGCTGGCGGCA
TCCCTGCAGACATTGGTGTT

Downstream 100 bases:

>100_bases
TGGCCTTCTTTATCGCCAGCTCACCGCACGCGCACAATCGTAGAAGCACCCCCGATCTCATGAAATGGGTCGCTATTTGT
GCATTGCCAGGTCTACTAGC

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MVQNVGSLYSIKRAVIDGEPVVNRVVTLTGKTFKQPRNVWALLGTPVHELLEEFGYKADKKLPRLILGGPMMGFTLPHAN
VPITKTSNCILAPTRREISPSTYEMECIRCSACAEACPASLLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCPSEI
PLVQYYRQAKAEIKTRKDEAAAAERAKIRFEEKNARMERDKAERENRFKKAADNRRKDMKSADGDDAIAAAIARVKAQKA
AADQAPNAEPAVKPAVAAAIAKAKAKQAAAQKADSAEPDNSEMSKLREERKRQARERKAQQAATDAPAESSGDGKKDAVA
AAIARAKAKKAQQAESASNAPAESTGDAKKDAVAAAIARAKAKKAQQTESASEAPVEKSGDAKKDAVAAAIARAKAKKAQ
QAESSTPTASEAPVKSSGDAKKDAVVAAIARAKAKKAQQAESAAQTESEAPAKSSGDAKKDAVAAAIARAKAKKAQQAES
STPTASEAPVKSSGDAKKDAVAAAIARAKAKKAQQAESSTRTESEASAESSGDAKKDAVAAAIARAKAKKAQQAKQVETK
ATTPEPLVEIEVEAEIQSEPVDPKKAAVTAAIARAKARKAQQAKQEESAETPESVVEPVVELKAETQQEPVDPKKAAVAA
AIARAKARKAQQEQDKKNNEEKE

Sequences:

>Translated_663_residues
MVQNVGSLYSIKRAVIDGEPVVNRVVTLTGKTFKQPRNVWALLGTPVHELLEEFGYKADKKLPRLILGGPMMGFTLPHAN
VPITKTSNCILAPTRREISPSTYEMECIRCSACAEACPASLLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCPSEI
PLVQYYRQAKAEIKTRKDEAAAAERAKIRFEEKNARMERDKAERENRFKKAADNRRKDMKSADGDDAIAAAIARVKAQKA
AADQAPNAEPAVKPAVAAAIAKAKAKQAAAQKADSAEPDNSEMSKLREERKRQARERKAQQAATDAPAESSGDGKKDAVA
AAIARAKAKKAQQAESASNAPAESTGDAKKDAVAAAIARAKAKKAQQTESASEAPVEKSGDAKKDAVAAAIARAKAKKAQ
QAESSTPTASEAPVKSSGDAKKDAVVAAIARAKAKKAQQAESAAQTESEAPAKSSGDAKKDAVAAAIARAKAKKAQQAES
STPTASEAPVKSSGDAKKDAVAAAIARAKAKKAQQAESSTRTESEASAESSGDAKKDAVAAAIARAKAKKAQQAKQVETK
ATTPEPLVEIEVEAEIQSEPVDPKKAAVTAAIARAKARKAQQAKQEESAETPESVVEPVVELKAETQQEPVDPKKAAVAA
AIARAKARKAQQEQDKKNNEEKE
>Mature_663_residues
MVQNVGSLYSIKRAVIDGEPVVNRVVTLTGKTFKQPRNVWALLGTPVHELLEEFGYKADKKLPRLILGGPMMGFTLPHAN
VPITKTSNCILAPTRREISPSTYEMECIRCSACAEACPASLLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCPSEI
PLVQYYRQAKAEIKTRKDEAAAAERAKIRFEEKNARMERDKAERENRFKKAADNRRKDMKSADGDDAIAAAIARVKAQKA
AADQAPNAEPAVKPAVAAAIAKAKAKQAAAQKADSAEPDNSEMSKLREERKRQARERKAQQAATDAPAESSGDGKKDAVA
AAIARAKAKKAQQAESASNAPAESTGDAKKDAVAAAIARAKAKKAQQTESASEAPVEKSGDAKKDAVAAAIARAKAKKAQ
QAESSTPTASEAPVKSSGDAKKDAVVAAIARAKAKKAQQAESAAQTESEAPAKSSGDAKKDAVAAAIARAKAKKAQQAES
STPTASEAPVKSSGDAKKDAVAAAIARAKAKKAQQAESSTRTESEASAESSGDAKKDAVAAAIARAKAKKAQQAKQVETK
ATTPEPLVEIEVEAEIQSEPVDPKKAAVTAAIARAKARKAQQAKQEESAETPESVVEPVVELKAETQQEPVDPKKAAVAA
AIARAKARKAQQEQDKKNNEEKE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=322, Percent_Identity=49.3788819875776, Blast_Score=270, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 69989; Mature: 69989

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQNVGSLYSIKRAVIDGEPVVNRVVTLTGKTFKQPRNVWALLGTPVHELLEEFGYKADK
CCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCHHHHHHHHCCCHHHHHHHHCCCCHH
KLPRLILGGPMMGFTLPHANVPITKTSNCILAPTRREISPSTYEMECIRCSACAEACPAS
CCCHHHCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHH
LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCPSEIPLVQYYRQAKAEIKTRKDEA
HCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
AAAERAKIRFEEKNARMERDKAERENRFKKAADNRRKDMKSADGDDAIAAAIARVKAQKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AADQAPNAEPAVKPAVAAAIAKAKAKQAAAQKADSAEPDNSEMSKLREERKRQARERKAQ
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAATDAPAESSGDGKKDAVAAAIARAKAKKAQQAESASNAPAESTGDAKKDAVAAAIARA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
KAKKAQQTESASEAPVEKSGDAKKDAVAAAIARAKAKKAQQAESSTPTASEAPVKSSGDA
HHHHHHHHHCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KKDAVVAAIARAKAKKAQQAESAAQTESEAPAKSSGDAKKDAVAAAIARAKAKKAQQAES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
STPTASEAPVKSSGDAKKDAVAAAIARAKAKKAQQAESSTRTESEASAESSGDAKKDAVA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHH
AAIARAKAKKAQQAKQVETKATTPEPLVEIEVEAEIQSEPVDPKKAAVTAAIARAKARKA
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHH
QQAKQEESAETPESVVEPVVELKAETQQEPVDPKKAAVAAAIARAKARKAQQEQDKKNNE
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EKE
CCC
>Mature Secondary Structure
MVQNVGSLYSIKRAVIDGEPVVNRVVTLTGKTFKQPRNVWALLGTPVHELLEEFGYKADK
CCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCHHHHHHHHCCCHHHHHHHHCCCCHH
KLPRLILGGPMMGFTLPHANVPITKTSNCILAPTRREISPSTYEMECIRCSACAEACPAS
CCCHHHCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHH
LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCPSEIPLVQYYRQAKAEIKTRKDEA
HCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
AAAERAKIRFEEKNARMERDKAERENRFKKAADNRRKDMKSADGDDAIAAAIARVKAQKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AADQAPNAEPAVKPAVAAAIAKAKAKQAAAQKADSAEPDNSEMSKLREERKRQARERKAQ
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAATDAPAESSGDGKKDAVAAAIARAKAKKAQQAESASNAPAESTGDAKKDAVAAAIARA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
KAKKAQQTESASEAPVEKSGDAKKDAVAAAIARAKAKKAQQAESSTPTASEAPVKSSGDA
HHHHHHHHHCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KKDAVVAAIARAKAKKAQQAESAAQTESEAPAKSSGDAKKDAVAAAIARAKAKKAQQAES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
STPTASEAPVKSSGDAKKDAVAAAIARAKAKKAQQAESSTRTESEASAESSGDAKKDAVA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHH
AAIARAKAKKAQQAKQVETKATTPEPLVEIEVEAEIQSEPVDPKKAAVTAAIARAKARKA
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHH
QQAKQEESAETPESVVEPVVELKAETQQEPVDPKKAAVAAAIARAKARKAQQEQDKKNNE
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EKE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]