Click here to switch to the map view.

The map label for this gene is rnfD

Identifier: 218708970

GI number: 218708970

Start: 1006765

End: 1007811

Strand: Reverse

Name: rnfD

Synonym: VS_0974

Alternate gene names: 218708970

Gene position: 1007811-1006765 (Counterclockwise)

Preceding gene: 218708971

Following gene: 218708969

Centisome position: 30.55

GC content: 49.86

Gene sequence:

>1047_bases
GTGGCCTTCTTTATCGCCAGCTCACCGCACGCGCACAATCGTAGAAGCACCCCCGATCTCATGAAATGGGTCGCTATTTG
TGCATTGCCAGGTCTACTAGCTCAAACCTACTTCTTTGGATGGGGTACGCTCATCCAGTTAGTATTTGCTATTGCACTTG
CTGTTACCTTTGAAGCCGCTGTAATGCTGCTAAGAAAGCGCCCGCCAGTGATGGCGCTACGTGACTACAGTGCTGTTGTC
ACCGCTTGGCTACTCAGTGTCGCGATTCCTCCACACTCTCCGTGGTGGATTCTAGTGATAGGTATGTTCTTCGCAATTGT
CATCGCGAAACACCTATACGGCGGACTTGGGCAAAACCCATTTAACCCAGCGATGGTCGCTTACGTTGTTTTGCTGATCT
CGTTCCCAGTTCAGATGACCAGTTGGAATGCTCCCGCGAGCTTAACCGCTGAAGCAACCAGCTTTGTGGACTCATTCTTG
ATGATCTTTACTGGCTTCAATAATGAAGGATTATCTCTACAACAAGCTCGTTTAGGGATTGATGGCACCACAATGGCGAC
GCCACTCGATGCCTTCAAAACCGCATTAACGGCAGGCAACACAGCGTCTGAAGCTCTGTCTCAACCTCAATTTAGCTGGT
TAGCTGGCGTGGGTTGGGAGTGGGTAAACCTTGCTTACCTTATTGGTGGCTTAGTGCTTATCAAGCAACGCGTGATTCAA
TGGCATATCCCAGTAGCGTTTCTGGGAAGCTTGACCCTATTTAGCCTAATGTTCTTGATGTTCACCCCTGGCGAGACCGC
ATCACCGACCATTCATCTATTGTCTGGTGCGACTATGCTCGGCGCATTTTTCATTGCGACCGACCCAGTTTCAGCATCCA
CGACAGTCAAAGGTCGCTTGGTGTTTGGTGCTCTGATCGGCGGTTTAGTCTTTATCATCCGCAGTTGGGGTGGTTTCCCT
GATGGCGTGGCGTTTGCTGTATTGTTAGCCAACATGTGTGTTCCACTGATTGACTACTACACCAAACCTCGTACATACGG
CCACTAA

Upstream 100 bases:

>100_bases
TCGACCCTAAAAAAGCAGCGGTTGCTGCAGCGATTGCTCGTGCTAAAGCAAGAAAGGCGCAGCAAGAGCAAGACAAAAAG
AATAATGAGGAGAAAGAGTA

Downstream 100 bases:

>100_bases
AGGGAGCGGATACCATGCTAAATGCAATTAAGAAAAACGGCCTTGTACTCGCGATTTTTGCGTGTGCTTCGACGGGTTTG
GTCGCGGTAACTCACTACCT

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAFFIASSPHAHNRRSTPDLMKWVAICALPGLLAQTYFFGWGTLIQLVFAIALAVTFEAAVMLLRKRPPVMALRDYSAVV
TAWLLSVAIPPHSPWWILVIGMFFAIVIAKHLYGGLGQNPFNPAMVAYVVLLISFPVQMTSWNAPASLTAEATSFVDSFL
MIFTGFNNEGLSLQQARLGIDGTTMATPLDAFKTALTAGNTASEALSQPQFSWLAGVGWEWVNLAYLIGGLVLIKQRVIQ
WHIPVAFLGSLTLFSLMFLMFTPGETASPTIHLLSGATMLGAFFIATDPVSASTTVKGRLVFGALIGGLVFIIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGH

Sequences:

>Translated_348_residues
MAFFIASSPHAHNRRSTPDLMKWVAICALPGLLAQTYFFGWGTLIQLVFAIALAVTFEAAVMLLRKRPPVMALRDYSAVV
TAWLLSVAIPPHSPWWILVIGMFFAIVIAKHLYGGLGQNPFNPAMVAYVVLLISFPVQMTSWNAPASLTAEATSFVDSFL
MIFTGFNNEGLSLQQARLGIDGTTMATPLDAFKTALTAGNTASEALSQPQFSWLAGVGWEWVNLAYLIGGLVLIKQRVIQ
WHIPVAFLGSLTLFSLMFLMFTPGETASPTIHLLSGATMLGAFFIATDPVSASTTVKGRLVFGALIGGLVFIIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGH
>Mature_347_residues
AFFIASSPHAHNRRSTPDLMKWVAICALPGLLAQTYFFGWGTLIQLVFAIALAVTFEAAVMLLRKRPPVMALRDYSAVVT
AWLLSVAIPPHSPWWILVIGMFFAIVIAKHLYGGLGQNPFNPAMVAYVVLLISFPVQMTSWNAPASLTAEATSFVDSFLM
IFTGFNNEGLSLQQARLGIDGTTMATPLDAFKTALTAGNTASEALSQPQFSWLAGVGWEWVNLAYLIGGLVLIKQRVIQW
HIPVAFLGSLTLFSLMFLMFTPGETASPTIHLLSGATMLGAFFIATDPVSASTTVKGRLVFGALIGGLVFIIRSWGGFPD
GVAFAVLLANMCVPLIDYYTKPRTYGH

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=57.3065902578797, Blast_Score=403, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_VIBSL (B7VLT5)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416591.1
- GeneID:   7160568
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0974
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- ProtClustDB:   PRK00816
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 37744; Mature: 37613

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1a405fb0)-; HASH(0x1a076f54)-; HASH(0x18701e00)-; HASH(0x408c44d8)-; HASH(0x1a83b1cc)-; HASH(0x19524980)-; HASH(0x1a2fa0d0)-; HASH(0x1aba50d4)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFFIASSPHAHNRRSTPDLMKWVAICALPGLLAQTYFFGWGTLIQLVFAIALAVTFEAA
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMLLRKRPPVMALRDYSAVVTAWLLSVAIPPHSPWWILVIGMFFAIVIAKHLYGGLGQNP
HHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMVAYVVLLISFPVQMTSWNAPASLTAEATSFVDSFLMIFTGFNNEGLSLQQARLGI
CCHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC
DGTTMATPLDAFKTALTAGNTASEALSQPQFSWLAGVGWEWVNLAYLIGGLVLIKQRVIQ
CCCCHHCHHHHHHHHHHCCCCHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WHIPVAFLGSLTLFSLMFLMFTPGETASPTIHLLSGATMLGAFFIATDPVSASTTVKGRL
HCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEHHHH
VFGALIGGLVFIIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure 
AFFIASSPHAHNRRSTPDLMKWVAICALPGLLAQTYFFGWGTLIQLVFAIALAVTFEAA
EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMLLRKRPPVMALRDYSAVVTAWLLSVAIPPHSPWWILVIGMFFAIVIAKHLYGGLGQNP
HHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMVAYVVLLISFPVQMTSWNAPASLTAEATSFVDSFLMIFTGFNNEGLSLQQARLGI
CCHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC
DGTTMATPLDAFKTALTAGNTASEALSQPQFSWLAGVGWEWVNLAYLIGGLVLIKQRVIQ
CCCCHHCHHHHHHHHHHCCCCHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WHIPVAFLGSLTLFSLMFLMFTPGETASPTIHLLSGATMLGAFFIATDPVSASTTVKGRL
HCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEHHHH
VFGALIGGLVFIIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA