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The map label for this gene is rnfE

Identifier: 218708968

GI number: 218708968

Start: 1005429

End: 1006121

Strand: Reverse

Name: rnfE

Synonym: VS_0972

Alternate gene names: 218708968

Gene position: 1006121-1005429 (Counterclockwise)

Preceding gene: 218708969

Following gene: 218708967

Centisome position: 30.49

GC content: 45.31

Gene sequence:

>693_bases
ATGAGTGACCATAAAACACTAATTAAAAATGGCATGTGGGCCAATAACCCTGCCCTAGTGCAACTCCTTGGCTTATGTCC
GCTGTTGGCTGTCTCTTCGACTGTGACTAACGCTCTTGGATTAGGTATCGCTACCTTGCTTGTACTAGTAGGCTCGAACG
TGTCTGTATCTTTGGTTCGAAACCATGTGCCAAAAGAAGTGCGTATTCCAGTGTTCGTGATGATCATTGCTTCACTAGTA
ACCTGTGTTCAACTTCTGATGAACGCTTACGCGTATGGCCTTTACCTCTCTTTGGGTATCTTTATCCCACTGATCGTAAC
CAACTGTATCATCATTGGCCGAGCGGAAGCCTTCGCTTCAAAGAATGAAGTGCTACCTGCGGCTCAAGATGGTTTCTGGA
TGGGTCTAGGCATGACATCAGTATTGGTCGTGTTAGGTGCGATGCGTGAGATTATTGGTAACGGTACCCTATTTGATGGC
GCAGACCTGCTGCTTGGTGACTGGGCTTCTGTGTTACGAATCCAGATATTCCAATTTGATAACAGCTTCTTGTTAGCCCT
GCTTCCACCGGGTGCCTTCATTGGTGTTGGTTTCTTAATTGCTTTGAAAAACATTATCGATAACCAAGCAAAATCTAGAC
AACCAAAACAAGAAAAACCAGTCATTGAACGCGCTCGCGTTACCAATGCCTAA

Upstream 100 bases:

>100_bases
CGCCAAGAGCTGTCGTTAAGTCAGTGAAACAAGCGGTGCAATACGTTAATCAAAACAACCAAGCATTGCTTGCTCAACCT
CTAAATTGTGGTGGTGAATA

Downstream 100 bases:

>100_bases
TAAGTTAAATTAGCTTAAACCCCGCTGAGTTAGCTCATCACTCAGCGGGGAAAATCAGATCTAAACAGTACATATAATAA
TGACGCTCATAAGAGCGCGT

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSDHKTLIKNGMWANNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVSVSLVRNHVPKEVRIPVFVMIIASLV
TCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAEAFASKNEVLPAAQDGFWMGLGMTSVLVVLGAMREIIGNGTLFDG
ADLLLGDWASVLRIQIFQFDNSFLLALLPPGAFIGVGFLIALKNIIDNQAKSRQPKQEKPVIERARVTNA

Sequences:

>Translated_230_residues
MSDHKTLIKNGMWANNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVSVSLVRNHVPKEVRIPVFVMIIASLV
TCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAEAFASKNEVLPAAQDGFWMGLGMTSVLVVLGAMREIIGNGTLFDG
ADLLLGDWASVLRIQIFQFDNSFLLALLPPGAFIGVGFLIALKNIIDNQAKSRQPKQEKPVIERARVTNA
>Mature_229_residues
SDHKTLIKNGMWANNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVSVSLVRNHVPKEVRIPVFVMIIASLVT
CVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAEAFASKNEVLPAAQDGFWMGLGMTSVLVVLGAMREIIGNGTLFDGA
DLLLGDWASVLRIQIFQFDNSFLLALLPPGAFIGVGFLIALKNIIDNQAKSRQPKQEKPVIERARVTNA

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787919, Length=212, Percent_Identity=64.1509433962264, Blast_Score=260, Evalue=7e-71,
Organism=Escherichia coli, GI1787914, Length=156, Percent_Identity=32.6923076923077, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFE_VIBSL (B7VLT3)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416589.1
- GeneID:   7160566
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0972
- HOGENOM:   HBG624915
- OMA:   VTNCVII
- ProtClustDB:   PRK12405
- GO:   GO:0006810
- HAMAP:   MF_00478
- InterPro:   IPR003667
- InterPro:   IPR010968
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01948

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 24683; Mature: 24552

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1a7e4590)-; HASH(0x1a86183c)-; HASH(0x1a4da068)-; HASH(0x1ac7cc68)-; HASH(0x194bf274)-; HASH(0x1a9207ac)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHKTLIKNGMWANNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVSVSLVR
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH
NHVPKEVRIPVFVMIIASLVTCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAEAFAS
HCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHC
KNEVLPAAQDGFWMGLGMTSVLVVLGAMREIIGNGTLFDGADLLLGDWASVLRIQIFQFD
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHEEEC
NSFLLALLPPGAFIGVGFLIALKNIIDNQAKSRQPKQEKPVIERARVTNA
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCH
>Mature Secondary Structure 
SDHKTLIKNGMWANNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVSVSLVR
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH
NHVPKEVRIPVFVMIIASLVTCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAEAFAS
HCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHC
KNEVLPAAQDGFWMGLGMTSVLVVLGAMREIIGNGTLFDGADLLLGDWASVLRIQIFQFD
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHEEEC
NSFLLALLPPGAFIGVGFLIALKNIIDNQAKSRQPKQEKPVIERARVTNA
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA