| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is mlaA [H]
Identifier: 218708859
GI number: 218708859
Start: 878630
End: 879415
Strand: Direct
Name: mlaA [H]
Synonym: VS_0859
Alternate gene names: 218708859
Gene position: 878630-879415 (Clockwise)
Preceding gene: 218708858
Following gene: 218708864
Centisome position: 26.63
GC content: 43.13
Gene sequence:
>786_bases ATGTCTATCAGTGTTTTAAGACTTTCGAGTTTACTCTTCATCGCAAGCTTAACGGTAGGTTGTTCGAGCGTACCAGATGA AAGCAATGGCGGTGATAATTTCGAAACCTCTGAATATGTCGAAGAGTCCCATCCGAACGACCCTTTTGAAGGTTTCAACC GAGCGATGTGGGATATCAACTACGAGTATCTCGACCCCTATTTGGTTCGACCTGTTTCTCTTGCCTATGTTGACTATACC CCTGTACCAATTCGCTCTGGTATTTCCAATTTTTTAGCCAACTTAGATGAGCCATCAAGTATGCTCAATAATCTCATTAT GGGTAATGGTGGGAAAGCGCTCGATCATTTCAATCGTTTTTGGATTAACTCTACCTTTGGTCTTCTTGGTCTGATTGATA TTGCTAGCGAAGCGGGGATCACCAAATATGACGAAAAGTCGTTTTCTGATGCGATTGGTCATTATGGGGTAGGGAATGGA CCGTATTTTATGCTGCCGGGATATGGCCCTGTGACGACCCGACAAGTAACAGAGCAAGTGGATAGCTTATATGTACCTTT GTCTCTGTTTACCTTTTGGGCAAAGTTAGGGAAGTGGGCCTTTGAAGGTATGGAAACACGTGCTCAGTTGGCCTCGCAAG AAGCCTTATTAGATGACTCTCCAGATCCATATGCTTTGACTCGTGATATTTACATCCAACGTCAAGATTTTAAAGCTGAG ATCGAGCCAGAAGAGGTTGATCTTGAGGAAGAAGATTTCATTGATGAGTATCTCGAAGATTACTAG
Upstream 100 bases:
>100_bases GTTAGCTATTCCGATTTATTAAAAAACGGTATAGACTTACGCAACCAATTGAGGCCAGCGATTGCTGGCCTTTTTTATTA TTCCTTATGGAAAAGGTGAT
Downstream 100 bases:
>100_bases AGACAAAGCTTAGATAAGCAGATAAGAGAAAGGCTCGATGTTAATTCAACATCGAGCCTTTTTAATGCTTTCTACTTTTC TACCTTTCGGTAAGAAGGTA
Product: lipoprotein vacJ precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MSISVLRLSSLLFIASLTVGCSSVPDESNGGDNFETSEYVEESHPNDPFEGFNRAMWDINYEYLDPYLVRPVSLAYVDYT PVPIRSGISNFLANLDEPSSMLNNLIMGNGGKALDHFNRFWINSTFGLLGLIDIASEAGITKYDEKSFSDAIGHYGVGNG PYFMLPGYGPVTTRQVTEQVDSLYVPLSLFTFWAKLGKWAFEGMETRAQLASQEALLDDSPDPYALTRDIYIQRQDFKAE IEPEEVDLEEEDFIDEYLEDY
Sequences:
>Translated_261_residues MSISVLRLSSLLFIASLTVGCSSVPDESNGGDNFETSEYVEESHPNDPFEGFNRAMWDINYEYLDPYLVRPVSLAYVDYT PVPIRSGISNFLANLDEPSSMLNNLIMGNGGKALDHFNRFWINSTFGLLGLIDIASEAGITKYDEKSFSDAIGHYGVGNG PYFMLPGYGPVTTRQVTEQVDSLYVPLSLFTFWAKLGKWAFEGMETRAQLASQEALLDDSPDPYALTRDIYIQRQDFKAE IEPEEVDLEEEDFIDEYLEDY >Mature_260_residues SISVLRLSSLLFIASLTVGCSSVPDESNGGDNFETSEYVEESHPNDPFEGFNRAMWDINYEYLDPYLVRPVSLAYVDYTP VPIRSGISNFLANLDEPSSMLNNLIMGNGGKALDHFNRFWINSTFGLLGLIDIASEAGITKYDEKSFSDAIGHYGVGNGP YFMLPGYGPVTTRQVTEQVDSLYVPLSLFTFWAKLGKWAFEGMETRAQLASQEALLDDSPDPYALTRDIYIQRQDFKAEI EPEEVDLEEEDFIDEYLEDY
Specific function: Actively prevents phospholipid accumulation at the cell surface. Probably maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane [H]
COG id: COG2853
COG function: function code M; Surface lipoprotein
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mlaA family [H]
Homologues:
Organism=Escherichia coli, GI1788688, Length=246, Percent_Identity=42.2764227642276, Blast_Score=198, Evalue=3e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007428 [H]
Pfam domain/function: PF04333 VacJ [H]
EC number: NA
Molecular weight: Translated: 29396; Mature: 29265
Theoretical pI: Translated: 3.86; Mature: 3.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISVLRLSSLLFIASLTVGCSSVPDESNGGDNFETSEYVEESHPNDPFEGFNRAMWDIN CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCC YEYLDPYLVRPVSLAYVDYTPVPIRSGISNFLANLDEPSSMLNNLIMGNGGKALDHFNRF HHHCCHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH WINSTFGLLGLIDIASEAGITKYDEKSFSDAIGHYGVGNGPYFMLPGYGPVTTRQVTEQV HHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH DSLYVPLSLFTFWAKLGKWAFEGMETRAQLASQEALLDDSPDPYALTRDIYIQRQDFKAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHEEEEEECCCCCC IEPEEVDLEEEDFIDEYLEDY CCHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure SISVLRLSSLLFIASLTVGCSSVPDESNGGDNFETSEYVEESHPNDPFEGFNRAMWDIN CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCC YEYLDPYLVRPVSLAYVDYTPVPIRSGISNFLANLDEPSSMLNNLIMGNGGKALDHFNRF HHHCCHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH WINSTFGLLGLIDIASEAGITKYDEKSFSDAIGHYGVGNGPYFMLPGYGPVTTRQVTEQV HHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH DSLYVPLSLFTFWAKLGKWAFEGMETRAQLASQEALLDDSPDPYALTRDIYIQRQDFKAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHEEEEEECCCCCC IEPEEVDLEEEDFIDEYLEDY CCHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]