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The map label for this gene is ccmH [H]

Identifier: 218708858

GI number: 218708858

Start: 877291

End: 878511

Strand: Direct

Name: ccmH [H]

Synonym: VS_0858

Alternate gene names: 218708858

Gene position: 877291-878511 (Clockwise)

Preceding gene: 218708857

Following gene: 218708859

Centisome position: 26.59

GC content: 43.73

Gene sequence:

>1221_bases
ATGACTCTATTTTGGATTTCTACCATTATCCTTTCGCTAGCAGCTATTTTCTTAATTGTTCTGCCCTTCATAAATAAGAA
GGCGAACAATGATGAAATGCTTCGCGACGAGTTGAACAAAGCATTCTATAAAGATCGTCTCGTTGAGCTCGAAGTAGAAG
CAGAAGAAGGCCTTGTTGATAACCAACAAGAGCTGATCGCTGATTTGAAACAGTCTCTACTTGATGATGTACCTGCGCAG
AAAGAGATGAAGAAGACCCAAATCTCAACATTGGGCGTCGTAGTACCATCTATTGTCCTAGTAGTGGTTGTTACATATGG
TATGTACTTTCAGTTTGGTGCTCTGGATAAAGTCCAACACTGGCAAGAAGTGAGTTCAAACCTTCCTGAGTTGTCTAAAA
AGCTAATGTCATCGGAAGGTGGTGCATTAACGGATGATGAACTAGAAGATTTGACTCTGGCACTTCGTACTCGTCTGCAC
TATCAACCAAAAGATTCGACAGGTTGGTTACTATTAGGTCGTATTGCATTGGCTAACCGCGACGCGGAAACTGCGAAAGA
TTCGATGCAAAGAGCTTACAAGCTTGAGCCAAAGAATGAAGATGTTCAGCTAGGTTATGCACAAGCATTGATGCTTTCAC
CTGATGATGCGGATCAAAACCAAGCTCGTTTAATTTTGAGCCGTTTGATTCAAAACGACTATGTTGATCTTCGTGTGTTC
TCGTTGCTAGCGTTTGATGCGTTTGAGCGTCAAGACTACCCAGGTGCTGTTAAGTACTGGAGCATCATGCAACAGATGAT
TGGTCCACAAGACAGTCGCTATGAAATGTTGTCGCGCAGTATTGAAAGTGCACAGAAGAAAATGGGCAATGCTATGGGCG
TTGACCAAGGTAAAACTGTTGCTGTAACGCTTGAATTATCTGGTGATGTGAATGCTGCCCCTAGTTCAGTGTTAGTTGTA
TCAGTGCACAGAGCTGACGGCTCACCAATGCCGATTGCTGCGGCTCGTTATCCGCTAGGAACTTTCCCTCGTACTGTCGT
TCTTGATGATGGCAACAGCATGTTGGAAGGGCAGAAGCTGTCCAGCCTTGAAACTCTAATGGTTAGAGCTAGGCTTGATA
CAGATGGTAACGTTTCAACTCGAGACGGTGATTGGTACGGTGAAAGTGAAGTGGTTGAACTGGGTGCCCCAGTTACCATT
GATATCAATAAGCAATATTAA

Upstream 100 bases:

>100_bases
CAAAGTCGAAAGCAGTAGAGTCAGATAAAGACTGGGATGCAGACAAAGAAGCTCGTTTAAAAGCGTTACTCGATGAAGAG
AACGACGGAGATAAGAAGTA

Downstream 100 bases:

>100_bases
TCATTACTTTGCATAGGTGTTAGCTATTCCGATTTATTAAAAAACGGTATAGACTTACGCAACCAATTGAGGCCAGCGAT
TGCTGGCCTTTTTTATTATT

Product: cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MTLFWISTIILSLAAIFLIVLPFINKKANNDEMLRDELNKAFYKDRLVELEVEAEEGLVDNQQELIADLKQSLLDDVPAQ
KEMKKTQISTLGVVVPSIVLVVVVTYGMYFQFGALDKVQHWQEVSSNLPELSKKLMSSEGGALTDDELEDLTLALRTRLH
YQPKDSTGWLLLGRIALANRDAETAKDSMQRAYKLEPKNEDVQLGYAQALMLSPDDADQNQARLILSRLIQNDYVDLRVF
SLLAFDAFERQDYPGAVKYWSIMQQMIGPQDSRYEMLSRSIESAQKKMGNAMGVDQGKTVAVTLELSGDVNAAPSSVLVV
SVHRADGSPMPIAAARYPLGTFPRTVVLDDGNSMLEGQKLSSLETLMVRARLDTDGNVSTRDGDWYGESEVVELGAPVTI
DINKQY

Sequences:

>Translated_406_residues
MTLFWISTIILSLAAIFLIVLPFINKKANNDEMLRDELNKAFYKDRLVELEVEAEEGLVDNQQELIADLKQSLLDDVPAQ
KEMKKTQISTLGVVVPSIVLVVVVTYGMYFQFGALDKVQHWQEVSSNLPELSKKLMSSEGGALTDDELEDLTLALRTRLH
YQPKDSTGWLLLGRIALANRDAETAKDSMQRAYKLEPKNEDVQLGYAQALMLSPDDADQNQARLILSRLIQNDYVDLRVF
SLLAFDAFERQDYPGAVKYWSIMQQMIGPQDSRYEMLSRSIESAQKKMGNAMGVDQGKTVAVTLELSGDVNAAPSSVLVV
SVHRADGSPMPIAAARYPLGTFPRTVVLDDGNSMLEGQKLSSLETLMVRARLDTDGNVSTRDGDWYGESEVVELGAPVTI
DINKQY
>Mature_405_residues
TLFWISTIILSLAAIFLIVLPFINKKANNDEMLRDELNKAFYKDRLVELEVEAEEGLVDNQQELIADLKQSLLDDVPAQK
EMKKTQISTLGVVVPSIVLVVVVTYGMYFQFGALDKVQHWQEVSSNLPELSKKLMSSEGGALTDDELEDLTLALRTRLHY
QPKDSTGWLLLGRIALANRDAETAKDSMQRAYKLEPKNEDVQLGYAQALMLSPDDADQNQARLILSRLIQNDYVDLRVFS
LLAFDAFERQDYPGAVKYWSIMQQMIGPQDSRYEMLSRSIESAQKKMGNAMGVDQGKTVAVTLELSGDVNAAPSSVLVVS
VHRADGSPMPIAAARYPLGTFPRTVVLDDGNSMLEGQKLSSLETLMVRARLDTDGNVSTRDGDWYGESEVVELGAPVTID
INKQY

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=196, Percent_Identity=35.2040816326531, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 45233; Mature: 45102

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFWISTIILSLAAIFLIVLPFINKKANNDEMLRDELNKAFYKDRLVELEVEAEEGLVD
CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCC
NQQELIADLKQSLLDDVPAQKEMKKTQISTLGVVVPSIVLVVVVTYGMYFQFGALDKVQH
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
WQEVSSNLPELSKKLMSSEGGALTDDELEDLTLALRTRLHYQPKDSTGWLLLGRIALANR
HHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCCC
DAETAKDSMQRAYKLEPKNEDVQLGYAQALMLSPDDADQNQARLILSRLIQNDYVDLRVF
CHHHHHHHHHHHHCCCCCCCCEEEEHEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
SLLAFDAFERQDYPGAVKYWSIMQQMIGPQDSRYEMLSRSIESAQKKMGNAMGVDQGKTV
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
AVTLELSGDVNAAPSSVLVVSVHRADGSPMPIAAARYPLGTFPRTVVLDDGNSMLEGQKL
EEEEEECCCCCCCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCHH
SSLETLMVRARLDTDGNVSTRDGDWYGESEVVELGAPVTIDINKQY
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCC
>Mature Secondary Structure 
TLFWISTIILSLAAIFLIVLPFINKKANNDEMLRDELNKAFYKDRLVELEVEAEEGLVD
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCC
NQQELIADLKQSLLDDVPAQKEMKKTQISTLGVVVPSIVLVVVVTYGMYFQFGALDKVQH
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
WQEVSSNLPELSKKLMSSEGGALTDDELEDLTLALRTRLHYQPKDSTGWLLLGRIALANR
HHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCCC
DAETAKDSMQRAYKLEPKNEDVQLGYAQALMLSPDDADQNQARLILSRLIQNDYVDLRVF
CHHHHHHHHHHHHCCCCCCCCEEEEHEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
SLLAFDAFERQDYPGAVKYWSIMQQMIGPQDSRYEMLSRSIESAQKKMGNAMGVDQGKTV
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
AVTLELSGDVNAAPSSVLVVSVHRADGSPMPIAAARYPLGTFPRTVVLDDGNSMLEGQKL
EEEEEECCCCCCCCCEEEEEEEECCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCHH
SSLETLMVRARLDTDGNVSTRDGDWYGESEVVELGAPVTIDINKQY
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]