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The map label for this gene is ccmH [H]

Identifier: 218708857

GI number: 218708857

Start: 876803

End: 877291

Strand: Direct

Name: ccmH [H]

Synonym: VS_0857

Alternate gene names: 218708857

Gene position: 876803-877291 (Clockwise)

Preceding gene: 218708856

Following gene: 218708858

Centisome position: 26.58

GC content: 42.74

Gene sequence:

>489_bases
ATGATTAAGAAGACACTGATTGCTCTATTCGCTACATTTGCTATTTCGGCGACTGTTTCTGCTGCGCCTATCGAATTTCA
TGAATTTGATACCGTTGATCAAGAGCAGCAGTTCAAAGAGCTAAGCAACACGCTGCGTTGCCCTAAATGTCAGAACAACA
CCATTGGTGATTCGAACGCAGAGCTTGCGGTTGATTTACGCCAAAAAGTGTATGAAATGACAAAAGATGGCAAGTCGAAG
CAAGACATCATTGATTACATGATTGCTCGCTACGGTAACTTTGTTACTTACAACCCACCACTCACATTAGCCACATCAAT
CCTTTGGGTTGGTCCGTTTGCGGTAGTCGTGTTTGGTTTCGGTTTGATCATTTTACGAAGCCGAAAGTCAAAGTCGAAAG
CAGTAGAGTCAGATAAAGACTGGGATGCAGACAAAGAAGCTCGTTTAAAAGCGTTACTCGATGAAGAGAACGACGGAGAT
AAGAAGTAA

Upstream 100 bases:

>100_bases
CTAACGGCGTAGTTCGTTATCGCCATGTTGGTGACGTGAACCCAACTAACTGGGCATCGACGCTTGAGCCGATGTACCAA
GAGTTGTTGGAGGAAGCGAA

Downstream 100 bases:

>100_bases
TGACTCTATTTTGGATTTCTACCATTATCCTTTCGCTAGCAGCTATTTTCTTAATTGTTCTGCCCTTCATAAATAAGAAG
GCGAACAATGATGAAATGCT

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MIKKTLIALFATFAISATVSAAPIEFHEFDTVDQEQQFKELSNTLRCPKCQNNTIGDSNAELAVDLRQKVYEMTKDGKSK
QDIIDYMIARYGNFVTYNPPLTLATSILWVGPFAVVVFGFGLIILRSRKSKSKAVESDKDWDADKEARLKALLDEENDGD
KK

Sequences:

>Translated_162_residues
MIKKTLIALFATFAISATVSAAPIEFHEFDTVDQEQQFKELSNTLRCPKCQNNTIGDSNAELAVDLRQKVYEMTKDGKSK
QDIIDYMIARYGNFVTYNPPLTLATSILWVGPFAVVVFGFGLIILRSRKSKSKAVESDKDWDADKEARLKALLDEENDGD
KK
>Mature_162_residues
MIKKTLIALFATFAISATVSAAPIEFHEFDTVDQEQQFKELSNTLRCPKCQNNTIGDSNAELAVDLRQKVYEMTKDGKSK
QDIIDYMIARYGNFVTYNPPLTLATSILWVGPFAVVVFGFGLIILRSRKSKSKAVESDKDWDADKEARLKALLDEENDGD
KK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=100, Percent_Identity=61, Blast_Score=136, Evalue=7e-34,
Organism=Escherichia coli, GI1790512, Length=65, Percent_Identity=50.7692307692308, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 18216; Mature: 18216

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKTLIALFATFAISATVSAAPIEFHEFDTVDQEQQFKELSNTLRCPKCQNNTIGDSNA
CCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
ELAVDLRQKVYEMTKDGKSKQDIIDYMIARYGNFVTYNPPLTLATSILWVGPFAVVVFGF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHH
GLIILRSRKSKSKAVESDKDWDADKEARLKALLDEENDGDKK
HHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIKKTLIALFATFAISATVSAAPIEFHEFDTVDQEQQFKELSNTLRCPKCQNNTIGDSNA
CCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
ELAVDLRQKVYEMTKDGKSKQDIIDYMIARYGNFVTYNPPLTLATSILWVGPFAVVVFGF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHH
GLIILRSRKSKSKAVESDKDWDADKEARLKALLDEENDGDKK
HHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]