| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708686
Identifier: 218708686
GI number: 218708686
Start: 694480
End: 694968
Strand: Direct
Name: 218708686
Synonym: VS_0665
Alternate gene names: NA
Gene position: 694480-694968 (Clockwise)
Preceding gene: 218708685
Following gene: 218708693
Centisome position: 21.05
GC content: 45.81
Gene sequence:
>489_bases ATGTCGTTAGCTGGGTGTGTCGGTAGTAATGCCGTTACTGGGAAATTAATGAAGTTCAACGTTGAGGTTGTAGATAACCG TTACGCTCGTGCTGGGGTCAACTTCTTGCTTGCTCCCGTTTACGCTTTAACATTCGCAGCCGATTACATCGTGTTTAACT CGATCGAATTCTGGGCGGGGAAAAACCCACTCACAGGCGCGCCTCATATCTTCGATAGTAAAGTCGATACCATGATTGAT GTGAACGACAGCCTAGACGATTCACTAAAAGAAGCCCCACTTGGCTTTAATAATCGTCAGATCGAATGGGGTGAGATGAA ACAAATCGATGAGAATACGATTCGTATGGACATCACCTACAATGATGGTCAGAAAGCCGTTTTGACGGGGGTTCGTGATG GCGACAAGGTCAGTTACTACATGGATGGTACGTTAGTATCAGAAACCTCTATTCAAGCGCTTGAGCAGTTAGCTGCCGAG AAAGTGTAA
Upstream 100 bases:
>100_bases ACTGCTGTTTGGCTATGCAAAAACCGAATCAATCATCGTGGCATAAGAGGGATCTATGAAAACAACAATCACAAAAGCAG TTGCAGTGGCAGCGATTGTC
Downstream 100 bases:
>100_bases CGCTTTCCGTTTTATATAGATAAAAGAAAAGCCGCTGGATTTACCTCCAGCGGCTTCGTGTTTTTTAGTATCTAGTAATT TAGCATCTAGTGCGTAGATT
Product: multidrug ABC transporter ATPase and permease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MSLAGCVGSNAVTGKLMKFNVEVVDNRYARAGVNFLLAPVYALTFAADYIVFNSIEFWAGKNPLTGAPHIFDSKVDTMID VNDSLDDSLKEAPLGFNNRQIEWGEMKQIDENTIRMDITYNDGQKAVLTGVRDGDKVSYYMDGTLVSETSIQALEQLAAE KV
Sequences:
>Translated_162_residues MSLAGCVGSNAVTGKLMKFNVEVVDNRYARAGVNFLLAPVYALTFAADYIVFNSIEFWAGKNPLTGAPHIFDSKVDTMID VNDSLDDSLKEAPLGFNNRQIEWGEMKQIDENTIRMDITYNDGQKAVLTGVRDGDKVSYYMDGTLVSETSIQALEQLAAE KV >Mature_161_residues SLAGCVGSNAVTGKLMKFNVEVVDNRYARAGVNFLLAPVYALTFAADYIVFNSIEFWAGKNPLTGAPHIFDSKVDTMIDV NDSLDDSLKEAPLGFNNRQIEWGEMKQIDENTIRMDITYNDGQKAVLTGVRDGDKVSYYMDGTLVSETSIQALEQLAAEK V
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17840; Mature: 17709
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLAGCVGSNAVTGKLMKFNVEVVDNRYARAGVNFLLAPVYALTFAADYIVFNSIEFWAG CCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECC KNPLTGAPHIFDSKVDTMIDVNDSLDDSLKEAPLGFNNRQIEWGEMKQIDENTIRMDITY CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCEEEEEEEE NDGQKAVLTGVRDGDKVSYYMDGTLVSETSIQALEQLAAEKV CCCCEEEEEECCCCCEEEEEECCEEECHHHHHHHHHHHHCCC >Mature Secondary Structure SLAGCVGSNAVTGKLMKFNVEVVDNRYARAGVNFLLAPVYALTFAADYIVFNSIEFWAG CCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECC KNPLTGAPHIFDSKVDTMIDVNDSLDDSLKEAPLGFNNRQIEWGEMKQIDENTIRMDITY CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCEEEEEEEE NDGQKAVLTGVRDGDKVSYYMDGTLVSETSIQALEQLAAEKV CCCCEEEEEECCCCCEEEEEECCEEECHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA