| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708312
Identifier: 218708312
GI number: 218708312
Start: 246542
End: 247480
Strand: Reverse
Name: 218708312
Synonym: VS_0250
Alternate gene names: NA
Gene position: 247480-246542 (Counterclockwise)
Preceding gene: 218708313
Following gene: 218708310
Centisome position: 7.5
GC content: 48.24
Gene sequence:
>939_bases TTGATGCATATTGATGAGCTAATTTATCCCAGACACAAGGATGTTATTCAGATGGGATTTGAATGGTTAGCTCTAGCTGC CGCTTTTCTTTGGGCCATTGCGAGCCTAATGTCAGTAAAGCCTGCCCAACACTTAGGTTCTTTCGCCTATAGCCGTTGGA GAATGGGTTGTACCGCGATCATCTTATCGAGCATGGCTTGGTTTACCGGAGGTTGGTCAACTGTCGAAGCCAATCTAATC ACGCCGATGATGCTATCTGGCCTGATTGGTATATTCATTGGTGATACCGCCCTATTTGCCTGTTTGAACCGAATGGGACC GCGCCAAGCGGGTTTACTGTTCTCTTGTCACGCCGTGTTCTCGGCGATTCTTGGTTACTTCCTGTTTAGTGAAAGCATGA CTTCTGTTGAGCTGATTGGCTCGGCTTTGGTGTTTAGTGGTGTATTAACTGCGATATTCTTTGGTCGTCGAGGACAAGCC AACAACCAGCTTGAAACCATCAAGGGCACCGTGTGGATTGGTGTCGCACTGGGAATCACCGCAGCGATCTGCCAAGCATT GGGCGGCATCATTGCCAAACCCGTGATGCAAACCAGTATCGACCCTGTTGCCGCTTCTGCCATTCGAATGATCACCGCTT TTATTGCTCACTCCGCATTTCGTTTAACAGGCGCCAAACTTTCACGCGCACTTAACCCAATGAATAAGCAGATATTCGCG ATTACCGCGGTTAATGGTTTTCTAGCGATGGCAGTAGGAATGACGTTGATTTTGTATGCGTTGCAGGAAGGCAATGTCGG TATGGTCGCTCTGTTATCTTCAACCACACCCATCATGTTGTTACCGATACTCTGGCTATACACCAAGCAGAGACCGAACG TCTACGCTTGGATAGGTGCCATTGTTGCCGTAGTGGGTACTGGTATTTTGGTCAGTTAG
Upstream 100 bases:
>100_bases AGCAAAGCAAGTGAACCACACCACCGAGCGACAGCTGACATAAACTAATAACTGAAACAAAGTAGTTCTTTCATAAGAAT CACTTTGTTCTCACTTCGGT
Downstream 100 bases:
>100_bases CCAAACGGTAAGTAGGACTAACTGAATAGAGAGCTAAGAGCGCGGGAACGGGAAAGCCGTCACATCATCGATATGGTCGT AGCCCAGCGCCAGCATGATC
Product: putative permeases of the drug/metabolite transporter
Products: NA
Alternate protein names: Drug/Metabolite Exporter Family Protein; DMT Family Permease; DMT Superfamily Permease; Integral Membrane; Permease DMT Superfamily; Conserved Domain Protein; Transporter Drug/Metabolite Exporter Family; Integral Membrane Protein; Permeases Of Drug/Metabolite Transporter
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MMHIDELIYPRHKDVIQMGFEWLALAAAFLWAIASLMSVKPAQHLGSFAYSRWRMGCTAIILSSMAWFTGGWSTVEANLI TPMMLSGLIGIFIGDTALFACLNRMGPRQAGLLFSCHAVFSAILGYFLFSESMTSVELIGSALVFSGVLTAIFFGRRGQA NNQLETIKGTVWIGVALGITAAICQALGGIIAKPVMQTSIDPVAASAIRMITAFIAHSAFRLTGAKLSRALNPMNKQIFA ITAVNGFLAMAVGMTLILYALQEGNVGMVALLSSTTPIMLLPILWLYTKQRPNVYAWIGAIVAVVGTGILVS
Sequences:
>Translated_312_residues MMHIDELIYPRHKDVIQMGFEWLALAAAFLWAIASLMSVKPAQHLGSFAYSRWRMGCTAIILSSMAWFTGGWSTVEANLI TPMMLSGLIGIFIGDTALFACLNRMGPRQAGLLFSCHAVFSAILGYFLFSESMTSVELIGSALVFSGVLTAIFFGRRGQA NNQLETIKGTVWIGVALGITAAICQALGGIIAKPVMQTSIDPVAASAIRMITAFIAHSAFRLTGAKLSRALNPMNKQIFA ITAVNGFLAMAVGMTLILYALQEGNVGMVALLSSTTPIMLLPILWLYTKQRPNVYAWIGAIVAVVGTGILVS >Mature_312_residues MMHIDELIYPRHKDVIQMGFEWLALAAAFLWAIASLMSVKPAQHLGSFAYSRWRMGCTAIILSSMAWFTGGWSTVEANLI TPMMLSGLIGIFIGDTALFACLNRMGPRQAGLLFSCHAVFSAILGYFLFSESMTSVELIGSALVFSGVLTAIFFGRRGQA NNQLETIKGTVWIGVALGITAAICQALGGIIAKPVMQTSIDPVAASAIRMITAFIAHSAFRLTGAKLSRALNPMNKQIFA ITAVNGFLAMAVGMTLILYALQEGNVGMVALLSSTTPIMLLPILWLYTKQRPNVYAWIGAIVAVVGTGILVS
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33489; Mature: 33489
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMHIDELIYPRHKDVIQMGFEWLALAAAFLWAIASLMSVKPAQHLGSFAYSRWRMGCTAI CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH ILSSMAWFTGGWSTVEANLITPMMLSGLIGIFIGDTALFACLNRMGPRQAGLLFSCHAVF HHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SAILGYFLFSESMTSVELIGSALVFSGVLTAIFFGRRGQANNQLETIKGTVWIGVALGIT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH AAICQALGGIIAKPVMQTSIDPVAASAIRMITAFIAHSAFRLTGAKLSRALNPMNKQIFA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE ITAVNGFLAMAVGMTLILYALQEGNVGMVALLSSTTPIMLLPILWLYTKQRPNVYAWIGA EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHH IVAVVGTGILVS HHHHHHCCCCCC >Mature Secondary Structure MMHIDELIYPRHKDVIQMGFEWLALAAAFLWAIASLMSVKPAQHLGSFAYSRWRMGCTAI CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH ILSSMAWFTGGWSTVEANLITPMMLSGLIGIFIGDTALFACLNRMGPRQAGLLFSCHAVF HHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SAILGYFLFSESMTSVELIGSALVFSGVLTAIFFGRRGQANNQLETIKGTVWIGVALGIT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH AAICQALGGIIAKPVMQTSIDPVAASAIRMITAFIAHSAFRLTGAKLSRALNPMNKQIFA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE ITAVNGFLAMAVGMTLILYALQEGNVGMVALLSSTTPIMLLPILWLYTKQRPNVYAWIGA EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHH IVAVVGTGILVS HHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA