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The map label for this gene is yrbH [C]

Identifier: 218708281

GI number: 218708281

Start: 212752

End: 213684

Strand: Direct

Name: yrbH [C]

Synonym: VS_0219

Alternate gene names: 218708281

Gene position: 212752-213684 (Clockwise)

Preceding gene: 218708280

Following gene: 218708282

Centisome position: 6.45

GC content: 37.94

Gene sequence:

>933_bases
ATGGCTAGTCCAATTGATATTGCAAGAGAAGTAATTCAGACCGAAATAGAAGGGTTGGATTACATGGCAAAAAGGTTAGG
CTCTGAATTTGAAGTGGCTGTCAATGCCATTCTTAACACAAAAGGTCGAACAATCATTTGTGGGATGGGAAAATCTGGAA
TTATAGGAAAAAAAATAGCAGCGTCTTTTGCTAGCACTGGTACGCCTAGTTTTTTTATGCATCCCGGAGAGGCATTTCAT
GGTGATCTTGGTATGGTGAAGCCTGAAGACGTATTCATTGCTATATCAAATTCAGGTGAAACAGATGAAGTGCTAAAACT
CTTACCTTTCTTACGTGATAATGATAACTTCGTTATTGCAATAACAGGAAAAGAAAGTTCAACTCTTGCTTCAAATTCAC
ACTGTCACTTAAATATTTCTGTTCCTAAAGAAGCATGCCCTTTACAGTTAGCTCCAACGTCTTCAACTACAGCAACTCTT
GTTATGGGGGATGCTTTAACAGTCGCTTTAATGGATGTACGTGGCTTTAAACCTGAAAATTTTGCTCGCTTTCATCCGGG
AGGGAGTTTAGGTCGTCGATTACTGTCGAAAGTACGAGATGAAATGTTTTCTGACAACCTTCCCAGTGTTTGTTCGGATG
CTGACTTTACTTCTATTATTCATAAAATATCATCAAGCCATTTAGGGTTAACATTAGTCAATTTAAATAATGAGACTTTA
GCTATAATCACTGATGGCGACTTGAGGAGAGCAATGGAATTGAAAGGCCGAGATGCCTTCGATTTGGTAGCAAAAGATAT
TGCTTCAATTAACCCAGCCTCAATACTCCCTGAATGTAATATACAAGAAGCCTATGAAGTCATGGAGAACAAAGGGATAA
CGTCATTAATAGTTCGAGAAAATAATACTGTTGTGGGTATTTTAAAGAAATAG

Upstream 100 bases:

>100_bases
TATAGGTGCAATGACATTTGATGGGATCGTCCCTCATGGAATAGATACTAATGATGATTACGAAACTATCAAAAAAATAA
TGGAAGAGAAGGCGTTTTAA

Downstream 100 bases:

>100_bases
CTTGAAGATAAACATTTAAAATTCAAGAACATGTCTATTTAAATGGTTCCATGCGATAGTGAGCTCTCATTTTTTAACTT
CATTAGTTAGTGGTGTCACA

Product: putative D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MASPIDIAREVIQTEIEGLDYMAKRLGSEFEVAVNAILNTKGRTIICGMGKSGIIGKKIAASFASTGTPSFFMHPGEAFH
GDLGMVKPEDVFIAISNSGETDEVLKLLPFLRDNDNFVIAITGKESSTLASNSHCHLNISVPKEACPLQLAPTSSTTATL
VMGDALTVALMDVRGFKPENFARFHPGGSLGRRLLSKVRDEMFSDNLPSVCSDADFTSIIHKISSSHLGLTLVNLNNETL
AIITDGDLRRAMELKGRDAFDLVAKDIASINPASILPECNIQEAYEVMENKGITSLIVRENNTVVGILKK

Sequences:

>Translated_310_residues
MASPIDIAREVIQTEIEGLDYMAKRLGSEFEVAVNAILNTKGRTIICGMGKSGIIGKKIAASFASTGTPSFFMHPGEAFH
GDLGMVKPEDVFIAISNSGETDEVLKLLPFLRDNDNFVIAITGKESSTLASNSHCHLNISVPKEACPLQLAPTSSTTATL
VMGDALTVALMDVRGFKPENFARFHPGGSLGRRLLSKVRDEMFSDNLPSVCSDADFTSIIHKISSSHLGLTLVNLNNETL
AIITDGDLRRAMELKGRDAFDLVAKDIASINPASILPECNIQEAYEVMENKGITSLIVRENNTVVGILKK
>Mature_309_residues
ASPIDIAREVIQTEIEGLDYMAKRLGSEFEVAVNAILNTKGRTIICGMGKSGIIGKKIAASFASTGTPSFFMHPGEAFHG
DLGMVKPEDVFIAISNSGETDEVLKLLPFLRDNDNFVIAITGKESSTLASNSHCHLNISVPKEACPLQLAPTSSTTATLV
MGDALTVALMDVRGFKPENFARFHPGGSLGRRLLSKVRDEMFSDNLPSVCSDADFTSIIHKISSSHLGLTLVNLNNETLA
IITDGDLRRAMELKGRDAFDLVAKDIASINPASILPECNIQEAYEVMENKGITSLIVRENNTVVGILKK

Specific function: Unknown

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=303, Percent_Identity=46.2046204620462, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI87082151, Length=305, Percent_Identity=41.3114754098361, Blast_Score=229, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 33409; Mature: 33278

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPIDIAREVIQTEIEGLDYMAKRLGSEFEVAVNAILNTKGRTIICGMGKSGIIGKKIA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
ASFASTGTPSFFMHPGEAFHGDLGMVKPEDVFIAISNSGETDEVLKLLPFLRDNDNFVIA
HHHHCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
ITGKESSTLASNSHCHLNISVPKEACPLQLAPTSSTTATLVMGDALTVALMDVRGFKPEN
EECCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEEEEEHHCCCCCCC
FARFHPGGSLGRRLLSKVRDEMFSDNLPSVCSDADFTSIIHKISSSHLGLTLVNLNNETL
CEEECCCHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCCCCCEEEEEECCCEE
AIITDGDLRRAMELKGRDAFDLVAKDIASINPASILPECNIQEAYEVMENKGITSLIVRE
EEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCCEEEEEEC
NNTVVGILKK
CCEEEEEEEC
>Mature Secondary Structure 
ASPIDIAREVIQTEIEGLDYMAKRLGSEFEVAVNAILNTKGRTIICGMGKSGIIGKKIA
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
ASFASTGTPSFFMHPGEAFHGDLGMVKPEDVFIAISNSGETDEVLKLLPFLRDNDNFVIA
HHHHCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
ITGKESSTLASNSHCHLNISVPKEACPLQLAPTSSTTATLVMGDALTVALMDVRGFKPEN
EECCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEEEEEHHCCCCCCC
FARFHPGGSLGRRLLSKVRDEMFSDNLPSVCSDADFTSIIHKISSSHLGLTLVNLNNETL
CEEECCCHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCCCCCEEEEEECCCEE
AIITDGDLRRAMELKGRDAFDLVAKDIASINPASILPECNIQEAYEVMENKGITSLIVRE
EEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCCEEEEEEC
NNTVVGILKK
CCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]