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The map label for this gene is rpe [H]

Identifier: 218708235

GI number: 218708235

Start: 169764

End: 170495

Strand: Reverse

Name: rpe [H]

Synonym: VS_0172

Alternate gene names: 218708235

Gene position: 170495-169764 (Counterclockwise)

Preceding gene: 218708236

Following gene: 218708234

Centisome position: 5.17

GC content: 43.58

Gene sequence:

>732_bases
ATGAAAAAAGTAAAAATTGCCGCAGGATTAGCACACGTAGATTACGGCCACATTGCAGACGTAGTGAAAGAAGTATCTGA
TGCTGGTGCCGATTACATCCACTGTGATGCAGCAGATATGCATGACCTGAAAAACCTGCAATTGATGGGGGGGCATCAAA
TTGTTGAAGGCATTCGTCCTTACACTGAAAAGCCAATTGAAGTTCACGCTTACTTCAAAGATTGCGACAAATTATTTATC
GATAAAATCGCAGCTGCTGGTGCAGACATGCTGATTCTACCAGCTGAGCATTTTATCGGTGCTCCTCTGTGTTACATCAT
TAAGTACTGTCAAAACCACGGTATGAAATTTGGTTTAACCGTTGGTGCATTAACGCCAGTGTCATTTGTTAAAGAATCTA
TCTACTACCTAGACCGTTTACACATTGTTATTCACGGCATTACTGATGGCGATGATGAATGGTTATGGCGCAAATCTGCG
ATTGCAATGATCCGCGAAGCACGTGAACTCATCAACGAACGCAACCCTAACTGTGAGCTATGTGTAGATGGCGGTATCCG
TAACCACAACATCGAAGAACTGCTTAATGAAGATATTGATGTGATGGTTGCATCGACAAATATCTTTGGCCACAAAGACG
GCATCACAGCAGGCGTTCGTGACTTCCGCGCAGCAATCGACCAACTGGAAGATAAAGCAGCGGCAGACACAAAAGAAGTC
GAAACCGTTTAA

Upstream 100 bases:

>100_bases
TACCAATAACAACGGCTGTGGAATTGGCCAGTACCTTCGCTTGATAGTGCAAGAAGGCCAACACACATGCCAAAACACTT
TTAGTTACTAAGGATAAATC

Downstream 100 bases:

>100_bases
GTAATTGCCTAGCGCAGTTTCTATCGAATCGATGCGCCACAGCAATCTAGAAATAACGGTGCTAAACCTACCCCCCTCTA
TGCTCGGGTTTGGCACCACT

Product: putative pentose-5-phosphate-3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKKVKIAAGLAHVDYGHIADVVKEVSDAGADYIHCDAADMHDLKNLQLMGGHQIVEGIRPYTEKPIEVHAYFKDCDKLFI
DKIAAAGADMLILPAEHFIGAPLCYIIKYCQNHGMKFGLTVGALTPVSFVKESIYYLDRLHIVIHGITDGDDEWLWRKSA
IAMIREARELINERNPNCELCVDGGIRNHNIEELLNEDIDVMVASTNIFGHKDGITAGVRDFRAAIDQLEDKAAADTKEV
ETV

Sequences:

>Translated_243_residues
MKKVKIAAGLAHVDYGHIADVVKEVSDAGADYIHCDAADMHDLKNLQLMGGHQIVEGIRPYTEKPIEVHAYFKDCDKLFI
DKIAAAGADMLILPAEHFIGAPLCYIIKYCQNHGMKFGLTVGALTPVSFVKESIYYLDRLHIVIHGITDGDDEWLWRKSA
IAMIREARELINERNPNCELCVDGGIRNHNIEELLNEDIDVMVASTNIFGHKDGITAGVRDFRAAIDQLEDKAAADTKEV
ETV
>Mature_243_residues
MKKVKIAAGLAHVDYGHIADVVKEVSDAGADYIHCDAADMHDLKNLQLMGGHQIVEGIRPYTEKPIEVHAYFKDCDKLFI
DKIAAAGADMLILPAEHFIGAPLCYIIKYCQNHGMKFGLTVGALTPVSFVKESIYYLDRLHIVIHGITDGDDEWLWRKSA
IAMIREARELINERNPNCELCVDGGIRNHNIEELLNEDIDVMVASTNIFGHKDGITAGVRDFRAAIDQLEDKAAADTKEV
ETV

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1789788, Length=244, Percent_Identity=27.0491803278689, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17552948, Length=211, Percent_Identity=26.5402843601896, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 27000; Mature: 27000

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVKIAAGLAHVDYGHIADVVKEVSDAGADYIHCDAADMHDLKNLQLMGGHQIVEGIRP
CCCEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCEEECCHHHHHHCCC
YTEKPIEVHAYFKDCDKLFIDKIAAAGADMLILPAEHFIGAPLCYIIKYCQNHGMKFGLT
CCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHHCCCEEEEE
VGALTPVSFVKESIYYLDRLHIVIHGITDGDDEWLWRKSAIAMIREARELINERNPNCEL
ECCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
CVDGGIRNHNIEELLNEDIDVMVASTNIFGHKDGITAGVRDFRAAIDQLEDKAAADTKEV
EECCCCCCCCHHHHHCCCCEEEEEECEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
ETV
CCC
>Mature Secondary Structure
MKKVKIAAGLAHVDYGHIADVVKEVSDAGADYIHCDAADMHDLKNLQLMGGHQIVEGIRP
CCCEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCEEECCHHHHHHCCC
YTEKPIEVHAYFKDCDKLFIDKIAAAGADMLILPAEHFIGAPLCYIIKYCQNHGMKFGLT
CCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHHCCCEEEEE
VGALTPVSFVKESIYYLDRLHIVIHGITDGDDEWLWRKSAIAMIREARELINERNPNCEL
ECCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
CVDGGIRNHNIEELLNEDIDVMVASTNIFGHKDGITAGVRDFRAAIDQLEDKAAADTKEV
EECCCCCCCCHHHHHCCCCEEEEEECEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
ETV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]