Click here to switch to the map view.

The map label for this gene is ytjP [H]

Identifier: 218708229

GI number: 218708229

Start: 162510

End: 163940

Strand: Reverse

Name: ytjP [H]

Synonym: VS_0166

Alternate gene names: 218708229

Gene position: 163940-162510 (Counterclockwise)

Preceding gene: 218708230

Following gene: 218708228

Centisome position: 4.97

GC content: 43.26

Gene sequence:

>1431_bases
ATGACGGAAAGCAATTTTTCAGCTCAAACACTGCGCTATTTTGATTCAAATATTGAAACGTTTACGCGTGATCTATCTGA
GCTAATTGCTATTCCGTCTGTACGAGATATCAGCAGCTGTTCACCCAATGCTCCTTTTGGTTTACCGATTAGAAACGCAT
TCGACTTTCTCATTAACTGGGCGAAACGAGAAGGGTTTGAAGTCCGTGATCATGATGGTTATGCCTTGGACATCAGCTTT
GGCGAAGGCTTACAAGAAATCGGCATATTGCATCATGTAGATGTGGTAGAAGCCGGTAATTTGGACTCATGGTTAACCCC
TGCATTTGAGATGCACCAACACGGTGATGACTTATTGGGGCGAGGCGTTACCGACAACAAAGGCCCGTTAATGGCCAGTC
TGTATATTCTCAAGATGTTTAAAGCGCTTGATGTAACACTCGACAAAAAAATAAGAGTGATCATCGGCGGCGCAGAAGAG
ACAACTTGGGAATGTGTAGAGCATTATTTTAATCATAACCCTCAACCGGATTATGGTTTCTCTCCAGATGGCGACTTCCC
AATCGTTAATGGAGAAAAAGGCATCCTATATGCGTCATTGCAACGAGAATTCCCAACTCACAATGGCCTAGGAACTTGTC
AGATCGTAAGCATTGAAAGTGAGCGTGACAGAACATCCACCTGCTATCAATTATCGATTTATCTGACAGGAGAAAAAGCG
GCTGAAGTAGCAGCAACATTTGAAACTTCAGCAACAGTCACTCTTGCCAATGTGGCACAAAGTGACAACCACCAACAAAA
GGAGTTGTACTGCGTTGAGTTGTCAACGCCGTGGGAGAAATCTCGCAACCCGCATAAGGTCGATAACTGTATGGATCAGT
TTGTTCGTCAAATGCGACATGTTGAAGGGTTAGACACTAACTCTCGAAATTTAATTGATTTACTAGACGCGTGTTTTAGT
GATTCCAATGATGCTTCGAAATTAGGACTAGCACACCAAGATAATGAAATGGGGTCGACTACATGCTGTGTCTCCTCCAT
CAATTTGAATCAACATGGCTACAACTTGGATTTTGATTTTCGGTTTCCTAAAGGACTGACTATCGATCAAGCTCGTACCC
AACTCCAGTATGTATCCCAACAATACGGAGTGAGATTGATTGAACACCAGTACTTACCTCTATCTTACCTCTCACCCGAA
AGTGAACTTATCCAAGCAATGGGAAAAGCTTATTCCGAAGTTACCAAAATGGACGCTCAATGCTTTAGCAAAGGTGCAGC
TTCTTACGCGCGCGCGCTAAACAATGGTGTGGCATTCGGACCTACTTTTCCTGGTGATGTGACTCGTGTCCATGAGCCCA
ATGAAAGGCTCAGCCTCGAGTCATTAAAAAGAGCAATAACAATATACGTGAAAGTTCTCATATCACTTTAG

Upstream 100 bases:

>100_bases
CAAAGCAACACGTTCAATAGCTGGGATTTATAATCAAAATGAGACCTCGCTTGCAAGTCTATTTACAAGCATGTCAGTAA
GGATAATTTAGGAATAAAAC

Downstream 100 bases:

>100_bases
GAGTAAATTATGAGAGATAAGGTTCAAGCACTTGCTGGAGGTATGATGGTATCCATCATCGTACTGGTTATCGCAGGTAT
ATTTATTGGTGTGGGCGCTG

Product: putative Xaa-His dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MTESNFSAQTLRYFDSNIETFTRDLSELIAIPSVRDISSCSPNAPFGLPIRNAFDFLINWAKREGFEVRDHDGYALDISF
GEGLQEIGILHHVDVVEAGNLDSWLTPAFEMHQHGDDLLGRGVTDNKGPLMASLYILKMFKALDVTLDKKIRVIIGGAEE
TTWECVEHYFNHNPQPDYGFSPDGDFPIVNGEKGILYASLQREFPTHNGLGTCQIVSIESERDRTSTCYQLSIYLTGEKA
AEVAATFETSATVTLANVAQSDNHQQKELYCVELSTPWEKSRNPHKVDNCMDQFVRQMRHVEGLDTNSRNLIDLLDACFS
DSNDASKLGLAHQDNEMGSTTCCVSSINLNQHGYNLDFDFRFPKGLTIDQARTQLQYVSQQYGVRLIEHQYLPLSYLSPE
SELIQAMGKAYSEVTKMDAQCFSKGAASYARALNNGVAFGPTFPGDVTRVHEPNERLSLESLKRAITIYVKVLISL

Sequences:

>Translated_476_residues
MTESNFSAQTLRYFDSNIETFTRDLSELIAIPSVRDISSCSPNAPFGLPIRNAFDFLINWAKREGFEVRDHDGYALDISF
GEGLQEIGILHHVDVVEAGNLDSWLTPAFEMHQHGDDLLGRGVTDNKGPLMASLYILKMFKALDVTLDKKIRVIIGGAEE
TTWECVEHYFNHNPQPDYGFSPDGDFPIVNGEKGILYASLQREFPTHNGLGTCQIVSIESERDRTSTCYQLSIYLTGEKA
AEVAATFETSATVTLANVAQSDNHQQKELYCVELSTPWEKSRNPHKVDNCMDQFVRQMRHVEGLDTNSRNLIDLLDACFS
DSNDASKLGLAHQDNEMGSTTCCVSSINLNQHGYNLDFDFRFPKGLTIDQARTQLQYVSQQYGVRLIEHQYLPLSYLSPE
SELIQAMGKAYSEVTKMDAQCFSKGAASYARALNNGVAFGPTFPGDVTRVHEPNERLSLESLKRAITIYVKVLISL
>Mature_475_residues
TESNFSAQTLRYFDSNIETFTRDLSELIAIPSVRDISSCSPNAPFGLPIRNAFDFLINWAKREGFEVRDHDGYALDISFG
EGLQEIGILHHVDVVEAGNLDSWLTPAFEMHQHGDDLLGRGVTDNKGPLMASLYILKMFKALDVTLDKKIRVIIGGAEET
TWECVEHYFNHNPQPDYGFSPDGDFPIVNGEKGILYASLQREFPTHNGLGTCQIVSIESERDRTSTCYQLSIYLTGEKAA
EVAATFETSATVTLANVAQSDNHQQKELYCVELSTPWEKSRNPHKVDNCMDQFVRQMRHVEGLDTNSRNLIDLLDACFSD
SNDASKLGLAHQDNEMGSTTCCVSSINLNQHGYNLDFDFRFPKGLTIDQARTQLQYVSQQYGVRLIEHQYLPLSYLSPES
ELIQAMGKAYSEVTKMDAQCFSKGAASYARALNNGVAFGPTFPGDVTRVHEPNERLSLESLKRAITIYVKVLISL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fifth step. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR010964
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: 3.4.13.3

Molecular weight: Translated: 53273; Mature: 53142

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESNFSAQTLRYFDSNIETFTRDLSELIAIPSVRDISSCSPNAPFGLPIRNAFDFLINW
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AKREGFEVRDHDGYALDISFGEGLQEIGILHHVDVVEAGNLDSWLTPAFEMHQHGDDLLG
HHHCCCEEECCCCEEEEEEHHCCHHHHCHHHEECEEECCCCCHHHCCHHHHHHCCHHHHC
RGVTDNKGPLMASLYILKMFKALDVTLDKKIRVIIGGAEETTWECVEHYFNHNPQPDYGF
CCCCCCCCCHHHHHHHHHHHHHHCCEECCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
SPDGDFPIVNGEKGILYASLQREFPTHNGLGTCQIVSIESERDRTSTCYQLSIYLTGEKA
CCCCCCEEECCCCCEEEEEHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCHH
AEVAATFETSATVTLANVAQSDNHQQKELYCVELSTPWEKSRNPHKVDNCMDQFVRQMRH
HHHHHEECCCCEEEEEEHHCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHH
VEGLDTNSRNLIDLLDACFSDSNDASKLGLAHQDNEMGSTTCCVSSINLNQHGYNLDFDF
HCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE
RFPKGLTIDQARTQLQYVSQQYGVRLIEHQYLPLSYLSPESELIQAMGKAYSEVTKMDAQ
ECCCCCCHHHHHHHHHHHHHHHCEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CFSKGAASYARALNNGVAFGPTFPGDVTRVHEPNERLSLESLKRAITIYVKVLISL
HHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TESNFSAQTLRYFDSNIETFTRDLSELIAIPSVRDISSCSPNAPFGLPIRNAFDFLINW
CCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AKREGFEVRDHDGYALDISFGEGLQEIGILHHVDVVEAGNLDSWLTPAFEMHQHGDDLLG
HHHCCCEEECCCCEEEEEEHHCCHHHHCHHHEECEEECCCCCHHHCCHHHHHHCCHHHHC
RGVTDNKGPLMASLYILKMFKALDVTLDKKIRVIIGGAEETTWECVEHYFNHNPQPDYGF
CCCCCCCCCHHHHHHHHHHHHHHCCEECCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
SPDGDFPIVNGEKGILYASLQREFPTHNGLGTCQIVSIESERDRTSTCYQLSIYLTGEKA
CCCCCCEEECCCCCEEEEEHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCHH
AEVAATFETSATVTLANVAQSDNHQQKELYCVELSTPWEKSRNPHKVDNCMDQFVRQMRH
HHHHHEECCCCEEEEEEHHCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHH
VEGLDTNSRNLIDLLDACFSDSNDASKLGLAHQDNEMGSTTCCVSSINLNQHGYNLDFDF
HCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE
RFPKGLTIDQARTQLQYVSQQYGVRLIEHQYLPLSYLSPESELIQAMGKAYSEVTKMDAQ
ECCCCCCHHHHHHHHHHHHHHHCEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CFSKGAASYARALNNGVAFGPTFPGDVTRVHEPNERLSLESLKRAITIYVKVLISL
HHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]