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The map label for this gene is dppB [H]

Identifier: 218708142

GI number: 218708142

Start: 66258

End: 67235

Strand: Direct

Name: dppB [H]

Synonym: VS_0076

Alternate gene names: 218708142

Gene position: 66258-67235 (Clockwise)

Preceding gene: 218708141

Following gene: 218708143

Centisome position: 2.01

GC content: 44.58

Gene sequence:

>978_bases
ATGGTTACGTTTCTGGTCAAGCGCCTGTTTCAGGCACTGATAGTGATGTTTGTGATCAGTTTGGTGGCGTTTGCCATTCA
GGATAACCTGGGCGACCCGTTACGTGAGTTAGTCGGTCAATCTGTTTCAGAGGCGGAGCGTCAAGCGCTACGCGATGAAC
TCGGCTTAAATGATCCCTTCGTTACAAAATACTCTCGCTTTGTAGGCGCAGCTCTACAGGGTGATCTTGGTACTTCATAC
TTCTTTAAGCGACCTGCAGTTGATGTGATTCTAGATAAACTAGTGGCAACTCTGGAGCTGGTATTTGGTGCTTCTTTAAT
TATTGTTTGTATGTCGATCCCACTCGGCGTTTACTCTGCGATTCACCCAAAAAGCTTTTTTACCAAATTGATTATGGCAG
GCAGTAGTGTCGGTATCTCGGTTCCTGTTTTCTTAACTGCAATCATGCTGATGTATGTGTTCTCTATCGAGCTCGGTTGG
CTGCCGTCATTTGGACGTGGTGATACGGCCAACTGGTTTGGTTGGGAGTCTGGCTTCTTAACGCTAGATGGCCTTGCACA
CTTAGTACTGCCGAGTATTGCTCTGGCATCTATCATGCTGCCGCTGTTTATTCGTCTAGTTCGTTCTGAAATGCTAGAAG
TTCTAAGTTCTGAATACATTAAGTTTGGTAAAGCGAAAGGCCTAGCGCTAAACAAAATCTATTACCAACATGCATTGAAA
AACACCATGCTACCGGTACTTACCGTTGGTGGTGTTCAGATTGGTACCATGGTGGCTTACACCATTCTTACGGAAACGGT
TTTCCAGTGGCCAGGTACAGGCTTCTTATTCTTAGAAGCAATCAACCGTGTAGATACACCACTGATTACCGCATACGTTA
TTTTTGTTGGTCTTATTTTCGTCGTGACTAACACAATTGTTGATTTGCTTTACGGTGTTATCAACCCAACCGTTAACATC
ACAGGGAAAGGAGCATAA

Upstream 100 bases:

>100_bases
TCTTCCTTCAGTCTGGCTAAATACCTTTTTTAAGACTGATTTTTTTGTTGTCTAGTCGCGGATTTCGATTAGATAGTCAT
GGATAGATAAGGGGCAAGGA

Downstream 100 bases:

>100_bases
TCATGGAACAGACATCGACAGTGCCGTCTCGCTGGGAACGTTTTAAGCAATCAGACATTGTGTATTACTTCTTACGCGAC
AAAGTGGCAATGGTGAGTTT

Product: dipeptide transport system permease dppB

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MVTFLVKRLFQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPFVTKYSRFVGAALQGDLGTSY
FFKRPAVDVILDKLVATLELVFGASLIIVCMSIPLGVYSAIHPKSFFTKLIMAGSSVGISVPVFLTAIMLMYVFSIELGW
LPSFGRGDTANWFGWESGFLTLDGLAHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFGKAKGLALNKIYYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGVINPTVNI
TGKGA

Sequences:

>Translated_325_residues
MVTFLVKRLFQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPFVTKYSRFVGAALQGDLGTSY
FFKRPAVDVILDKLVATLELVFGASLIIVCMSIPLGVYSAIHPKSFFTKLIMAGSSVGISVPVFLTAIMLMYVFSIELGW
LPSFGRGDTANWFGWESGFLTLDGLAHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFGKAKGLALNKIYYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGVINPTVNI
TGKGA
>Mature_325_residues
MVTFLVKRLFQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPFVTKYSRFVGAALQGDLGTSY
FFKRPAVDVILDKLVATLELVFGASLIIVCMSIPLGVYSAIHPKSFFTKLIMAGSSVGISVPVFLTAIMLMYVFSIELGW
LPSFGRGDTANWFGWESGFLTLDGLAHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFGKAKGLALNKIYYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGVINPTVNI
TGKGA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=35.693215339233, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=31.25, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789888, Length=323, Percent_Identity=30.3405572755418, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787761, Length=310, Percent_Identity=33.8709677419355, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=30.030959752322, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787550, Length=263, Percent_Identity=31.9391634980989, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788504, Length=279, Percent_Identity=26.1648745519713, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35565; Mature: 35565

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTFLVKRLFQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
VTKYSRFVGAALQGDLGTSYFFKRPAVDVILDKLVATLELVFGASLIIVCMSIPLGVYSA
HHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPKSFFTKLIMAGSSVGISVPVFLTAIMLMYVFSIELGWLPSFGRGDTANWFGWESGFL
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
TLDGLAHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFGKAKGLALNKIYYQHALK
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVTNTIVDLLYGVINPTVNITGKGA
HHHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MVTFLVKRLFQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
VTKYSRFVGAALQGDLGTSYFFKRPAVDVILDKLVATLELVFGASLIIVCMSIPLGVYSA
HHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPKSFFTKLIMAGSSVGISVPVFLTAIMLMYVFSIELGWLPSFGRGDTANWFGWESGFL
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
TLDGLAHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFGKAKGLALNKIYYQHALK
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVTNTIVDLLYGVINPTVNITGKGA
HHHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]