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The map label for this gene is ydfO

Identifier: 218699880

GI number: 218699880

Start: 1575680

End: 1576090

Strand: Reverse

Name: ydfO

Synonym: ECIAI39_1507

Alternate gene names: 218699880

Gene position: 1576090-1575680 (Counterclockwise)

Preceding gene: 218699889

Following gene: 218699872

Centisome position: 30.71

GC content: 31.39

Gene sequence:

>411_bases
ATGGATCAGGTAGTCATTTTTAAACAAATATTTGATAAAGTTCGAAACGATTTAAACTATCAATGGTTTTATTCTGAGCT
AAAACGTCACAATGTCTCACATTACATTTACTATTTAGCCACAGAGAATGTTCATATTGTATTAAAAAATGATAATACAG
TGTTATTAAAGGGCCTAAAAAACATTGTGTCTGTCAAATTTTCAAAGGATAGGCATCTTATAGAAACGACCTCTAATAAG
CTGAAATCCAGAGAGATCACATTTCAGGAATACAGAAGAAACCTTGCTAAAGCAGGAGTTTTTCGGTGGGTTACAAATAT
CCACGAACAAAAAAGATATTACTATACCTTTGATAATTCATTACTATTTACTGAAAGCATCCAGAAAACTACACAGATCT
TACCACTCTAA

Upstream 100 bases:

>100_bases
TGACATTACTGAATTGCTCAGAAAACAGGTCAGACCAGATTGAAGCAATTTAGATAATCGTGCAGACTACGCCCCCTCAT
ATCACATGGAAGGTTTATCT

Downstream 100 bases:

>100_bases
ACCATAACGTCCGGCTTCTCTCACTCCTGAGCCGGACTGCATTGGTTTAATAAAAACCATCAACAATTGTGATTTAGATA
TTCGGAACCATTCAAATATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNK
LKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTESIQKTTQILPL

Sequences:

>Translated_136_residues
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNK
LKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTESIQKTTQILPL
>Mature_136_residues
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNK
LKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTESIQKTTQILPL

Specific function: Unknown

COG id: COG5562

COG function: function code R; Phage envelope protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybcV and ycgX [H]

Homologues:

Organism=Escherichia coli, GI87081931, Length=135, Percent_Identity=100, Blast_Score=275, Evalue=8e-76,
Organism=Escherichia coli, GI87081758, Length=135, Percent_Identity=79.2592592592593, Blast_Score=227, Evalue=2e-61,
Organism=Escherichia coli, GI1787408, Length=134, Percent_Identity=44.0298507462687, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009833
- ProDom:   PD021249 [H]

Pfam domain/function: PF07166 DUF1398 [H]

EC number: NA

Molecular weight: Translated: 16454; Mature: 16454

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLK
CCCEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCEEEHHHHH
NIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNS
HHHEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
LLFTESIQKTTQILPL
EEEHHHHHHHHHCCCC
>Mature Secondary Structure
MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLK
CCCEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCEEEHHHHH
NIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNS
HHHEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
LLFTESIQKTTQILPL
EEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]