| Definition | Escherichia coli 55989, complete genome. |
|---|---|
| Accession | NC_011748 |
| Length | 5,154,862 |
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The map label for this gene is yddB
Identifier: 218695032
GI number: 218695032
Start: 1687617
End: 1689989
Strand: Reverse
Name: yddB
Synonym: EC55989_1627
Alternate gene names: 218695032
Gene position: 1689989-1687617 (Counterclockwise)
Preceding gene: 218695033
Following gene: 218695031
Centisome position: 32.78
GC content: 45.85
Gene sequence:
>2373_bases ATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTGATGTGGCGCAGGCCGTCGATGACAAAAACATGTACAT GCATTTTTTTGAAGAGATGACGGTCTATGCTCCTGTCCCTGTACCCGTAAACGGCAACACGCATTACACCAGTGAAAGCA TCGAGCGTTTACCGACCGGGAATGGCAATATCAGCGATCTGCTGAGAACCAACCCTGCGGTACGCATGGATTCAACGCAA AGTACCTCGTTGAACCAGGGAGATATTCGCCCTGAGAAAATCTCTATTCACGGTGCGTCGCCCTACCAGAATGCCTATTT GATTGACGGTATTAGTGCAACTAATAACCTGAACCCAGCGAATGAGTCCGATGCCAGTAGTGCAACCAATATTAGCGGGA TGTCACAGGGGTATTATCTTGATGTCAGCTTACTGGACAATGTGACGCTTTATGACAGTTTTGTGCCGGTTGAATTTGGT CGCTTCAATGGCGGGGTAATTGATGCAAAGATCAAACGCTTCAACGCTGATGATAGCAAGGTTAAATTGGGTTATCGCAC TACGCGTTCGGACTGGTTAACATCGCATATCGATGAGAATAACAAGAGCGCATTTAATCAAGGCTCTTCAGGAAGTACTT ATTACTCCCCAGATTTTAAAAAGAACTTTTATATCTTGTCGTTTAATCAGGAACTCGCTGATAACTTCGGCGTTACCGCC GGTTTATCGCGCCGCCAGTCTGATATCACCCGCGCGGATTATGTTTCGAATGACGGCATTGTCGCCGGTCGGGCACAGTA TAAAAACGTTATCGATACTGCATTGAGCAAATTTACCTGGTTTGCCAGCGACCGCTTTACCCACGATTTAACCTTAAAAT ATACCGGCTCCAGCCGTGATTATAATACCAGCACCTTCCCGCAGTCTGATCGCGAAATGGGTAATAAATCCTACGGTCTG GCATGGGATATGGATACGCAGCTCGCATGGGCCAAACTGCGTACCACCGTTGGTTGGGATCATATTAGTGATTATACCCG TCACGATCATGACATCTGGTACACCGAACTTTCATGTACATATGGTGATATTACAGGGCGTTGCACCAGTGGCGGATTAG GACACATTTCCCAGGCTGTAGATAATTACACCTTCAAAACACGCCTGGACTGGCAAAAATTCGCCGTGGGTAATGTTTCG CATCAACCCTACTTCGGCGCGGAATACATCTATTCCGATGCGTGGACTGAACGCCATAACCAGTCTGAATCCTATGTGAT TAATGCTGCCGGAAAGAAAACTAACCATACCATTTACCATAAAGGTAAAGGCAGCCTGGGAATTGACAACTACACGCTGT ATATGGCGGATCGCATTAGCTGGCGTAATGTGTCATTAATGCCCGGCGTGCGGTATGACTATGACAACTATCTGTCAAAC CACAATATCTCCCCGCGCTTTATGACGGAATGGGATATTTTTGCTGATCAAACCTCAATGATTACAGCAGGTTATAACCG TTACTATGGCGGGAATATTCTTGATATGGGATTACGTGATATCCGCAATAGCTGGACGGAATCGGTATCAGGCAATAAAA CCCTGACGTGTTATCAGGATTTGAAAACGCCTTATAACGATGAACTGGCAATGGGATTGCAGCAGAAAATCGGTAAGAAC GTTATTGCGCGCGCAAACTATGTTTACCGTGAAGCGCATGATCAAATCAGCAAAAGCAGTCGTACCGACAGCGCGACTAA AACCACCATTACTGAATATAACAACGACGGCAAAACAAAAACGCATTCGTTCAACCTCAGTTTTGAACTGGCCGAACCCC TGCATATCAGCCAGGTAGATATTAACCCGCAAATTGTCTTTAGCTATATCAAGAGCAAGGGCAACTTGTCGTTAAACAAT GGTTATGAGGAGAGCAATACCGGTGATAACCAGGTGGTTTATAACGGTAATCTGGTTTCTTACGATAGCGTTCCAGTGGC AGATTTTAATAACCCATTAAAGATCTCCTTAAACATGGATTTCACGCATCAACCGAGCGGGTTAGTGTGGGCGAATACGC TGGCCTGGCAAGAAGCGCGTAAAGCTCGCATTATCCTGGGTAAGACAAATGCGCAATACATCAGCGAATATTCAGATTAC AAGCAGTATGTTGACGAAAAACTGGATAGCAGCCTGACCTGGGACACCCGCTTGTCCTGGACGCCACAATTTCTGAAACA ACAAAACCTGACGATCAGTGCCGATATTCTCAATGTATTGGATAGCAAAACCGCTGTTGATACAACGAATACCGGTGTGG CGACCTACGCCAGTGGCCGTACTTTCTGGCTTGATGTCAGCATGAAATTTTAA
Upstream 100 bases:
>100_bases ACACATCAACCCGGTGTCTGGAACCTGGCTGATGATATTTGTGACATTAGCACGGTTTTATAACAACAATAAAAGCCCTG CTGTACGGAGATATAAATAA
Downstream 100 bases:
>100_bases TAGTTCGGATTTTACTTAACCGGGTAAATTCGCCCGGTTTTCGCATGGAGATAATTATGAGAAACCTCTGTTTCTTACTG ACGTTAGTGGCAACTCTGTT
Product: putative porin protein
Products: NA
Alternate protein names: CDS103 [H]
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYILSFNQELADNFGVTA GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTSGGLGHISQAVDNYTFKTRLDWQKFAVGNVS HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTCYQDLKTPYNDELAMGLQQKIGKN VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF
Sequences:
>Translated_790_residues MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYILSFNQELADNFGVTA GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTSGGLGHISQAVDNYTFKTRLDWQKFAVGNVS HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTCYQDLKTPYNDELAMGLQQKIGKN VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF >Mature_790_residues MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYILSFNQELADNFGVTA GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTSGGLGHISQAVDNYTFKTRLDWQKFAVGNVS HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTCYQDLKTPYNDELAMGLQQKIGKN VIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNN GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1369 [H]
Homologues:
Organism=Escherichia coli, GI1787771, Length=790, Percent_Identity=98.9873417721519, Blast_Score=1622, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 89063; Mature: 89063
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG CCCEECCCEEEECCHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCCCCHHHHHHCCCC NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEECCCCCCE VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYILSFNQELADNFGVTA EEEEEEECCHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHCCCCCC GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE YGDITGRCTSGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHN ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHEECCCCCCCCCCHHHEECCHHHHHCC QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTCYQD CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHH LKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE THSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS EEEEEEEEEECCCEEEEEECCCHHHHEEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHH KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGR HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCE TFWLDVSMKF EEEEEEEECC >Mature Secondary Structure MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG CCCEECCCEEEECCHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCCCCHHHHHHCCCC NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEECCCCCCE VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYILSFNQELADNFGVTA EEEEEEECCHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHCCCCCC GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE YGDITGRCTSGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHN ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHEECCCCCCCCCCHHHEECCHHHHHCC QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSN CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTCYQD CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHH LKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTK CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE THSFNLSFELAEPLHISQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS EEEEEEEEEECCCEEEEEECCCHHHHEEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHH KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGR HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCE TFWLDVSMKF EEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]