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The map label for this gene is yddA

Identifier: 218695033

GI number: 218695033

Start: 1690027

End: 1691712

Strand: Reverse

Name: yddA

Synonym: EC55989_1628

Alternate gene names: 218695033

Gene position: 1691712-1690027 (Counterclockwise)

Preceding gene: 218695034

Following gene: 218695032

Centisome position: 32.82

GC content: 43.18

Gene sequence:

>1686_bases
ATGATAACCATTCCCATTACGTTTTGTATGTTGATAGCAAAGTATCTCTGTCTGTTGAAGCCCTTTTGGCTGCGTAAGAA
TAATAAAACTTCAGTGCTGTTAATCATTATTATCCTCGCCATGATCCTTGGCGTGGTTAAAATTCAGGTCTGGTTAAACG
ACTGGAATAATGATTTTTTCAATGCGCTAAGCCAGAAAGAAACCGATAAGCTTTGGCAGCTTGTCCTTTGGTTCCCTGCC
CTGCTGGGGATCTTTGTATTAATATCCGTGAACAAAACATGGTTAATTAAACTGCTGACTATTCGCTGGCGCGAATGGTT
AACAGATTACTACCTTAATCGCTGGTTTGCAGATAAAAACTACTACTTCACGCAGATCTACGGCGAGCATAAAAATACAG
ATAACCCTGACCAACGTATCGCTGAAGACATTCTCTTACTAATCAGCAAAACGCTCAGTCTTTCATTTGGCTTCATCCAG
TCACTTAGCATGCTGATCACCTTTACCGTTATTCTTTGGCAAAGCGCGGGTACGCTCTCATTCACTGTTGGTGGAACAGA
ATGGAATATCCAGGGGTATATGGTCTATACCGTTGTGCTCATTGTGATCGGTGGAACTTTATTTACCCATAAGGTTGGTA
AGCGTATTCGTCCGCTTAATGTGGAAAAACAACGTAGCGAAGCGACATTTCGAACTAATCTTGTGCAGCATAATAAGCAG
GCAGAACTGATTGCGCTAAGCAATGCTGAGTCTCTACAACGCCAGGAGTTGAGCGACAATTTTCATACCATTAAAGAGAA
CTGGCATCGTTTAATGAATCGTCAGCGGTGGCTTGATTACTGGCAAAATATTTATTCGCGCTCGCTTAGCGTTCTTCCCT
ACTTTCTGTTATTGCCGCAGTTTATTAGCGGGCAGATCAATCTGGGCGGACTAATGAAATCGCGCCAGGCATTTATGCTA
GTATCGAACAATTTAAGCTGGTTTATTTATAAATATGACGAACTTGCTGAGCTGGCTGCGGTTATCGATCGCTTGTATGA
GTTCCATCAACTCACTGAACAGCGCCCTACGAATAAGCCTAAAAATTGCCAACATGCGGTACAAGTGGCTAATGCGAGTA
TTCGTACGCCTGATAATAAGATCATATTAGAGAACTTGAACTTTCATGTTTCGCCAGGCAAATGGCTATTACTGAAAGGC
TACTCTGGTGCGGGAAAAACCACACTGCTTAAAACATTATCCCACTGCTGGCCGTGGTTTAAAGGTGATATTTCTTCTCC
TGCTGACAGTTGGTATGTGTCACAAACACCGTTAATCAAAAGCGGCTTACTGAAAGAGATTATTTGTAAAGCACTTCCCC
TGCCCGTAGACGATAAATCGTTGAGCGAAGTACTGCATCAGGTTGGTCTGGGGAAATTGGCTGCGCGTATTCATGAGCAC
GATCGCTGGGGAGATATTCTTTCCAGCGGCGAAAAACAACGTATCGCCCTGGCACGATTAATTTTACGACGTCCGAAATG
GATATTTCTTGACGAAACTACCTCTCATCTTGAGGAACAAGAGGCTATACGCTTACTGCGTTTAGTGCGTGAAAAACTAC
CCACAAGCGGCGTCATTATGGTTACACATCAACCCGGTGTCTGGAACCTGGCTGATGATATTTGTGACATTAGCACGGTT
TTATAA

Upstream 100 bases:

>100_bases
TATTCCTTTATATTTCATATTGTTAAATGATACTTAAATAAATTTCATCAGTAAATCATTGCCATAGATAATCATTGGAT
GGCACAATCAATTTTCGCTA

Downstream 100 bases:

>100_bases
CAACAATAAAAGCCCTGCTGTACGGAGATATAAATAAATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTG
ATGTGGCGCAGGCCGTCGAT

Product: putative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component

Products: NA

Alternate protein names: CDS102 [H]

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKSGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHEH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISTV
L

Sequences:

>Translated_561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKSGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHEH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISTV
L
>Mature_561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKSGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHEH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISTV
L

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=523, Percent_Identity=24.6653919694073, Blast_Score=131, Evalue=2e-30,
Organism=Homo sapiens, GI9945308, Length=518, Percent_Identity=23.3590733590734, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI4506341, Length=565, Percent_Identity=21.4159292035398, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI7262393, Length=555, Percent_Identity=22.3423423423423, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI73747915, Length=251, Percent_Identity=24.3027888446215, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI73747917, Length=251, Percent_Identity=24.3027888446215, Blast_Score=69, Evalue=2e-11,
Organism=Escherichia coli, GI1787772, Length=561, Percent_Identity=98.7522281639929, Blast_Score=1133, Evalue=0.0,
Organism=Escherichia coli, GI1786575, Length=363, Percent_Identity=25.6198347107438, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787112, Length=321, Percent_Identity=26.1682242990654, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786654, Length=234, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786653, Length=193, Percent_Identity=27.979274611399, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72000520, Length=542, Percent_Identity=26.5682656826568, Blast_Score=125, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17564250, Length=537, Percent_Identity=26.2569832402235, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17532411, Length=600, Percent_Identity=24, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17532409, Length=502, Percent_Identity=24.1035856573705, Blast_Score=113, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI72000518, Length=565, Percent_Identity=24.4247787610619, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17542146, Length=522, Percent_Identity=21.6475095785441, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17558960, Length=184, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324985, Length=263, Percent_Identity=27.3764258555133, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24643394, Length=531, Percent_Identity=23.3521657250471, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24638550, Length=530, Percent_Identity=21.5094339622642, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638552, Length=530, Percent_Identity=21.5094339622642, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638554, Length=530, Percent_Identity=21.5094339622642, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638546, Length=530, Percent_Identity=21.5094339622642, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638556, Length=530, Percent_Identity=21.5094339622642, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638548, Length=530, Percent_Identity=21.5094339622642, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638558, Length=530, Percent_Identity=21.3207547169811, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 64995; Mature: 64995

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFF
CEEEHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
NALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWQSAGTLS
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
EEECCEEEEECHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
AELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKP
HHCCCCCCCHHHHCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLLKTLSHCWPWF
CHHHHHHHHHCCCEECCCCEEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
KGDISSPADSWYVSQTPLIKSGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHEH
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIM
HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VTHQPGVWNLADDICDISTVL
EEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFF
CEEEHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
NALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWQSAGTLS
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
EEECCEEEEECHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
AELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKP
HHCCCCCCCHHHHCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLLKTLSHCWPWF
CHHHHHHHHHCCCEECCCCEEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
KGDISSPADSWYVSQTPLIKSGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHEH
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIM
HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VTHQPGVWNLADDICDISTVL
EEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]