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The map label for this gene is hdeD [H]

Identifier: 218550344

GI number: 218550344

Start: 3107165

End: 3107734

Strand: Direct

Name: hdeD [H]

Synonym: EFER_3036

Alternate gene names: 218550344

Gene position: 3107165-3107734 (Clockwise)

Preceding gene: 218550340

Following gene: 218550345

Centisome position: 67.71

GC content: 42.98

Gene sequence:

>570_bases
ATGTTAAACGTTGATAAAAAAACGATAATAAATTTTGATTCAAATATGCTCAACAAGCACAAAACAACGATCAGGCTGAT
ATCGATATTAATGTTCATTGCCGGTGTTTTATGTCTCAGTTTCCCCTTTGTCTCAGGTGATATAATAAGCATTATTGTTG
GAATTCTGTTAATTTGTGCCGGTCTTGCCTTAATGGTTGGACTTTTCACTCATCGACAGCATAATTTCTGGCCGGTAGTT
GGCGGTTTTCTGGTCGCGATTGCCTATCTGCTTATTGGTTACTTTTTCCTGCGAGCACCAGAAGTCGGTATCTTCGCAAT
TGCCGCCTTCCTGGCCGGATTGTTCTGCGTCGGGGGGATTATTCGTTTGATGGGCTGGTATCGCTTTCGTCATGTTAAAG
GCAGCTGGCTACAACTCATCATTGGTATTCTGGATATTCTGATCGCCTGGTTATTCCTTGGGGCAACACCACTGATGTCT
GTGACGATGGTTTCCACCCTGGTCGGCATTGAACTGGTGATTAGTGCGGTTAGTTTGTTCAGTTTCTCCCAGTTATTTGC
CAAATCATAA

Upstream 100 bases:

>100_bases
TTTGTTTAGGAATTTTTTATAAAACAAGGGGCATTCTCAACCTGCATTTTGGCATAGATTTATAACAGTTATTATTTAAA
AAATATGGCGCGGAGGCTTT

Downstream 100 bases:

>100_bases
TCGCTTTATAAAAATAGAAAAATTCATATCATTTTTTCATTTTTAAGCTCATGGTCACGCTATGTGACTATGAGCTTACT
GAAACATTATGCTTCGTCAT

Product: acid-resistance membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MLNVDKKTIINFDSNMLNKHKTTIRLISILMFIAGVLCLSFPFVSGDIISIIVGILLICAGLALMVGLFTHRQHNFWPVV
GGFLVAIAYLLIGYFFLRAPEVGIFAIAAFLAGLFCVGGIIRLMGWYRFRHVKGSWLQLIIGILDILIAWLFLGATPLMS
VTMVSTLVGIELVISAVSLFSFSQLFAKS

Sequences:

>Translated_189_residues
MLNVDKKTIINFDSNMLNKHKTTIRLISILMFIAGVLCLSFPFVSGDIISIIVGILLICAGLALMVGLFTHRQHNFWPVV
GGFLVAIAYLLIGYFFLRAPEVGIFAIAAFLAGLFCVGGIIRLMGWYRFRHVKGSWLQLIIGILDILIAWLFLGATPLMS
VTMVSTLVGIELVISAVSLFSFSQLFAKS
>Mature_189_residues
MLNVDKKTIINFDSNMLNKHKTTIRLISILMFIAGVLCLSFPFVSGDIISIIVGILLICAGLALMVGLFTHRQHNFWPVV
GGFLVAIAYLLIGYFFLRAPEVGIFAIAAFLAGLFCVGGIIRLMGWYRFRHVKGSWLQLIIGILDILIAWLFLGATPLMS
VTMVSTLVGIELVISAVSLFSFSQLFAKS

Specific function: Unknown

COG id: COG3247

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789927, Length=189, Percent_Identity=70.8994708994709, Blast_Score=286, Evalue=6e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20801; Mature: 20801

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNVDKKTIINFDSNMLNKHKTTIRLISILMFIAGVLCLSFPFVSGDIISIIVGILLICA
CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
GLALMVGLFTHRQHNFWPVVGGFLVAIAYLLIGYFFLRAPEVGIFAIAAFLAGLFCVGGI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IRLMGWYRFRHVKGSWLQLIIGILDILIAWLFLGATPLMSVTMVSTLVGIELVISAVSLF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
SFSQLFAKS
HHHHHHHCC
>Mature Secondary Structure
MLNVDKKTIINFDSNMLNKHKTTIRLISILMFIAGVLCLSFPFVSGDIISIIVGILLICA
CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
GLALMVGLFTHRQHNFWPVVGGFLVAIAYLLIGYFFLRAPEVGIFAIAAFLAGLFCVGGI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IRLMGWYRFRHVKGSWLQLIIGILDILIAWLFLGATPLMSVTMVSTLVGIELVISAVSLF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
SFSQLFAKS
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]