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The map label for this gene is grdB [H]

Identifier: 218550322

GI number: 218550322

Start: 3083925

End: 3084971

Strand: Reverse

Name: grdB [H]

Synonym: EFER_3014

Alternate gene names: 218550322

Gene position: 3084971-3083925 (Counterclockwise)

Preceding gene: 218550323

Following gene: 218550321

Centisome position: 67.23

GC content: 51.77

Gene sequence:

>1047_bases
ATGAGTTTACGAATACTACATTACCTCAACCAGTTCTTTGGTCAAAAGGGCGGGGAAGAGGCGGCGGGATGTCCGCCTGA
GATCCATATCGGGCCAATTGGTGTCGGGCTACAGTTGGAAAAATTGCTGGCAGGTGAAGGCAATATTATTGCCACCATTA
TCTGCGGTGACAGCTATTTCAATGAAAATGCTGACCTTTGCAAAGAGTACGTGCGTAACGTTCTCAATGTACATCAACCT
GATATGGTGGTGACCGGCCCTGCATTTAACGCCGGTCGCTATGGTATGGCTTGCGGTACAGTGGCGCAGGTCGCTGCTGA
GATGGGGATTCCGGTGATTAGTGGGATTTACCCGGAGAACCCAGGCTACGAGTTATATCGCCCGTGGATGTATGCCGTGG
AAACAGGTAATAGTGCGGCATCCATGCGTACAGCCTTGCCTGCAATGGCAGCGTTGATTAAACGTTTTATTGCCACCGGG
GGAAATCCTGGTCTTCCGGAGGAAGCCGGTTATCTACCACGAGGCGTGCGTATCAACCATTTTGAGTCAGACGTTGGCGC
TGTTCGTGCCGTCAGGATGTTGATGCAAAAAATGAAGGGCGAGCCTTTCAAAACAGAATATCCGATGCCAGCTTTTGATC
GCGTTGATCCTCAGCCTCCGGTTATCGATCTCTCCACTGCCACCATTGCGCTGGTAACGTCCGGTGGCGTCGTTCCGAAA
GGTAACCCGGATCATATCGAATCTTCGAGCGCCTCACGGTTTGGCGAATATGCGATTGATGATCTTGCTGCGCTGAGTTC
AGGCACGCATCAGACGGCACATGGCGGCTACGATCCCGTTGCCTGTAATGATGATCCAAACCGTGTATTACCGGTCGATG
CCCTGCGTGAGCTCGAAAAGGAAGGGAAGATTGGCAAGCTGTTTAGTCATTACTACTCAACAGTGGGTAATGGCACTTCG
GTCGCAAACGCCCGTAAGTACGGCGCTGATATTGCCATGAAACTGCAGAAAGCGGGAGTAAGCGCAGCCATTCTGACGTC
GACATGA

Upstream 100 bases:

>100_bases
GACGGCAGTATTACTGTGGAAATACAAGCCATTACTGGCGCAACAAACGAGCTGGGGATTCACACCCTTTCGGCGCACAG
CGGCTAAGGAGTGAGCGCAA

Downstream 100 bases:

>100_bases
GGCACTTGCACTCGTTGCGGCGCAACGATGGTCAAAGAGATTGAAAAAGTCATGCCGGTAGTCCATATCGCAACGGTTGT
TCCGATATCACTCACGGTTG

Product: glycine reductase complex component B subunit gamma

Products: NA

Alternate protein names: Selenoprotein PB gamma [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSLRILHYLNQFFGQKGGEEAAGCPPEIHIGPIGVGLQLEKLLAGEGNIIATIICGDSYFNENADLCKEYVRNVLNVHQP
DMVVTGPAFNAGRYGMACGTVAQVAAEMGIPVISGIYPENPGYELYRPWMYAVETGNSAASMRTALPAMAALIKRFIATG
GNPGLPEEAGYLPRGVRINHFESDVGAVRAVRMLMQKMKGEPFKTEYPMPAFDRVDPQPPVIDLSTATIALVTSGGVVPK
GNPDHIESSSASRFGEYAIDDLAALSSGTHQTAHGGYDPVACNDDPNRVLPVDALRELEKEGKIGKLFSHYYSTVGNGTS
VANARKYGADIAMKLQKAGVSAAILTST

Sequences:

>Translated_348_residues
MSLRILHYLNQFFGQKGGEEAAGCPPEIHIGPIGVGLQLEKLLAGEGNIIATIICGDSYFNENADLCKEYVRNVLNVHQP
DMVVTGPAFNAGRYGMACGTVAQVAAEMGIPVISGIYPENPGYELYRPWMYAVETGNSAASMRTALPAMAALIKRFIATG
GNPGLPEEAGYLPRGVRINHFESDVGAVRAVRMLMQKMKGEPFKTEYPMPAFDRVDPQPPVIDLSTATIALVTSGGVVPK
GNPDHIESSSASRFGEYAIDDLAALSSGTHQTAHGGYDPVACNDDPNRVLPVDALRELEKEGKIGKLFSHYYSTVGNGTS
VANARKYGADIAMKLQKAGVSAAILTST
>Mature_347_residues
SLRILHYLNQFFGQKGGEEAAGCPPEIHIGPIGVGLQLEKLLAGEGNIIATIICGDSYFNENADLCKEYVRNVLNVHQPD
MVVTGPAFNAGRYGMACGTVAQVAAEMGIPVISGIYPENPGYELYRPWMYAVETGNSAASMRTALPAMAALIKRFIATGG
NPGLPEEAGYLPRGVRINHFESDVGAVRAVRMLMQKMKGEPFKTEYPMPAFDRVDPQPPVIDLSTATIALVTSGGVVPKG
NPDHIESSSASRFGEYAIDDLAALSSGTHQTAHGGYDPVACNDDPNRVLPVDALRELEKEGKIGKLFSHYYSTVGNGTSV
ANARKYGADIAMKLQKAGVSAAILTST

Specific function: In the first step of glycine reductase, the substrate is bound to component PB via a Schiff base intermediate. Then the PB- activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated seleno

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the grdB/grdF/grdH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010186
- InterPro:   IPR022787
- InterPro:   IPR010187 [H]

Pfam domain/function: PF07355 GRDB [H]

EC number: =1.21.4.2 [H]

Molecular weight: Translated: 37092; Mature: 36960

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS00104 EPSP_SYNTHASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRILHYLNQFFGQKGGEEAAGCPPEIHIGPIGVGLQLEKLLAGEGNIIATIICGDSYF
CCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCC
NENADLCKEYVRNVLNVHQPDMVVTGPAFNAGRYGMACGTVAQVAAEMGIPVISGIYPEN
CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCC
PGYELYRPWMYAVETGNSAASMRTALPAMAALIKRFIATGGNPGLPEEAGYLPRGVRINH
CCCHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
FESDVGAVRAVRMLMQKMKGEPFKTEYPMPAFDRVDPQPPVIDLSTATIALVTSGGVVPK
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCEEEECCCEEEEEECCCCCCC
GNPDHIESSSASRFGEYAIDDLAALSSGTHQTAHGGYDPVACNDDPNRVLPVDALRELEK
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEECHHHHHHHHH
EGKIGKLFSHYYSTVGNGTSVANARKYGADIAMKLQKAGVSAAILTST
CCCHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
SLRILHYLNQFFGQKGGEEAAGCPPEIHIGPIGVGLQLEKLLAGEGNIIATIICGDSYF
CCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCC
NENADLCKEYVRNVLNVHQPDMVVTGPAFNAGRYGMACGTVAQVAAEMGIPVISGIYPEN
CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCC
PGYELYRPWMYAVETGNSAASMRTALPAMAALIKRFIATGGNPGLPEEAGYLPRGVRINH
CCCHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
FESDVGAVRAVRMLMQKMKGEPFKTEYPMPAFDRVDPQPPVIDLSTATIALVTSGGVVPK
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCEEEECCCEEEEEECCCCCCC
GNPDHIESSSASRFGEYAIDDLAALSSGTHQTAHGGYDPVACNDDPNRVLPVDALRELEK
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEECHHHHHHHHH
EGKIGKLFSHYYSTVGNGTSVANARKYGADIAMKLQKAGVSAAILTST
CCCHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA