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The map label for this gene is ygiK [H]

Identifier: 218550205

GI number: 218550205

Start: 2961687

End: 2962988

Strand: Direct

Name: ygiK [H]

Synonym: EFER_2897

Alternate gene names: 218550205

Gene position: 2961687-2962988 (Clockwise)

Preceding gene: 218550204

Following gene: 218550211

Centisome position: 64.54

GC content: 45.7

Gene sequence:

>1302_bases
ATGGATAGTTATATCGCGCTTACACTGTTTGGCTGTTTTTTTGTACTGGTCTTCATTGGTGTGCCCATTTCGTTCTCAAT
CGGTATTGCGACTGTAACTTCAATGCTATTGATGTTTCCCTGGGATATCGCGGCAATTACTGTTTCGCAGCGACTGGCTA
ATGGACTGGATAACTTTGCCCTGTTGGCAATCCCCTTTTTCATCTTTGCCGGAACGCTGATGAACAGCGGCGGTATTGCG
ATACGTTTGATTAACCTCGCCCAGGTAATGGTTGGCCGCGTTCCTGGTTCACTTGGTCATGTGAACGTCCTGGCGAATAT
GATGTTTGGTTCTATTTCCGGTTCAGCCGTTGCGGCTGCTGCTGCCGTTGGTGGCACACTTAATCCCATTCAGACCAAAG
AAGGTTATGATCCGGCATTTTCTACCGCTGTAAACGTCTCATCCTGTATTACTGGATTACTGATACCGCCCTCAAACGTG
TTAATCGTGTTTTCCCTGACAGCTGGCGGCGTTTCTGTAGCATCGTTATTTATGGCGGGATATTTGCCAGGGCTCTTAAT
GGGTCTCGCGGTAATGATAGTCTGCGGCGTTATTGCTAAACGCCGTGGTTACCCACTTTCAGAAAGAGCAACCCTTGCTC
AGGCATGTAAAGCGTTTCTGGATGCCTTACCAAGTTTGCTTCTGGTGTTCATTGTAATGGGCGGCATTCTGGGCGGCATT
TTTACCGCAACTGAAGCGTCTGCGATTGCCGTTGTCTACACATTTATTCTCTCGGTGCTGATTTACCGGGAAGTAAAATG
GCGCGATTTACCCAAACTGATTCTGGAATCGGTTGTTACCACTTCGATTGTATTACTGTTGATCGGTTTTTCCGTGGGCA
TGTCCTGGGCAATGACTAATGCTGATATTCCTTATATGATCAGCGACGCGTTGATGGGGATTTCTGATAACCCACTGATC
ATATTGCTGCTAATTAATATCGTCTTATTAATTGTCGGTATCTTTATGGACATGACACCGGCTGTACTAATCTTCACACC
AATCTTCTTGCCGATTGCACAAGAGCTGGGAATGGACCCGGTACATTTCGGTATTATGATGGTGGCCAACCTTTGTATTG
GGCTGTTAACACCGCCGGTGGGTAGTGCGCTATTTGTTGGTTGTTCTATCTCTGGTGTGAAGATTCAACATTTGATCAAA
CCATTGCTGCCATTTTATGCCGCATTGTTAATCGCGTTGATGATGATCACTTATATCCCGCAAATTTCTTTGTTTGTTCC
ACAGTTATTGGGATTAATGTAA

Upstream 100 bases:

>100_bases
TCATTCTGCCATTAAGTGGAGCGGTGATGATGTTTTATGCCTTGTGTTTTATTAATCAAAGTATTCAACAACTGAAACAA
CATGCGCAGGAGGCCAGTTA

Downstream 100 bases:

>100_bases
ATAAGCCCTGAATAATTTATGTTGCAGACTATGCGACGTGATGTATGACGGAAATTACTCATTGCCGGATAAAACGTATT
TATCCGGCAATGATATGCAA

Product: c4-dicarboxylate permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MDSYIALTLFGCFFVLVFIGVPISFSIGIATVTSMLLMFPWDIAAITVSQRLANGLDNFALLAIPFFIFAGTLMNSGGIA
IRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAAAAVGGTLNPIQTKEGYDPAFSTAVNVSSCITGLLIPPSNV
LIVFSLTAGGVSVASLFMAGYLPGLLMGLAVMIVCGVIAKRRGYPLSERATLAQACKAFLDALPSLLLVFIVMGGILGGI
FTATEASAIAVVYTFILSVLIYREVKWRDLPKLILESVVTTSIVLLLIGFSVGMSWAMTNADIPYMISDALMGISDNPLI
ILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDPVHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQHLIK
PLLPFYAALLIALMMITYIPQISLFVPQLLGLM

Sequences:

>Translated_433_residues
MDSYIALTLFGCFFVLVFIGVPISFSIGIATVTSMLLMFPWDIAAITVSQRLANGLDNFALLAIPFFIFAGTLMNSGGIA
IRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAAAAVGGTLNPIQTKEGYDPAFSTAVNVSSCITGLLIPPSNV
LIVFSLTAGGVSVASLFMAGYLPGLLMGLAVMIVCGVIAKRRGYPLSERATLAQACKAFLDALPSLLLVFIVMGGILGGI
FTATEASAIAVVYTFILSVLIYREVKWRDLPKLILESVVTTSIVLLLIGFSVGMSWAMTNADIPYMISDALMGISDNPLI
ILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDPVHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQHLIK
PLLPFYAALLIALMMITYIPQISLFVPQLLGLM
>Mature_433_residues
MDSYIALTLFGCFFVLVFIGVPISFSIGIATVTSMLLMFPWDIAAITVSQRLANGLDNFALLAIPFFIFAGTLMNSGGIA
IRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAAAAVGGTLNPIQTKEGYDPAFSTAVNVSSCITGLLIPPSNV
LIVFSLTAGGVSVASLFMAGYLPGLLMGLAVMIVCGVIAKRRGYPLSERATLAQACKAFLDALPSLLLVFIVMGGILGGI
FTATEASAIAVVYTFILSVLIYREVKWRDLPKLILESVVTTSIVLLLIGFSVGMSWAMTNADIPYMISDALMGISDNPLI
ILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDPVHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQHLIK
PLLPFYAALLIALMMITYIPQISLFVPQLLGLM

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=417, Percent_Identity=36.9304556354916, Blast_Score=249, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45746; Mature: 45746

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSYIALTLFGCFFVLVFIGVPISFSIGIATVTSMLLMFPWDIAAITVSQRLANGLDNFA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHH
LLAIPFFIFAGTLMNSGGIAIRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAA
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH
AAVGGTLNPIQTKEGYDPAFSTAVNVSSCITGLLIPPSNVLIVFSLTAGGVSVASLFMAG
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEECCCCEEEEEEECCCHHHHHHHHHHH
YLPGLLMGLAVMIVCGVIAKRRGYPLSERATLAQACKAFLDALPSLLLVFIVMGGILGGI
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTATEASAIAVVYTFILSVLIYREVKWRDLPKLILESVVTTSIVLLLIGFSVGMSWAMTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECC
ADIPYMISDALMGISDNPLIILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDP
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCH
VHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQHLIKPLLPFYAALLIALMMITYIP
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QISLFVPQLLGLM
HHHHHHHHHHCCC
>Mature Secondary Structure
MDSYIALTLFGCFFVLVFIGVPISFSIGIATVTSMLLMFPWDIAAITVSQRLANGLDNFA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHH
LLAIPFFIFAGTLMNSGGIAIRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAA
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH
AAVGGTLNPIQTKEGYDPAFSTAVNVSSCITGLLIPPSNVLIVFSLTAGGVSVASLFMAG
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEECCCCEEEEEEECCCHHHHHHHHHHH
YLPGLLMGLAVMIVCGVIAKRRGYPLSERATLAQACKAFLDALPSLLLVFIVMGGILGGI
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTATEASAIAVVYTFILSVLIYREVKWRDLPKLILESVVTTSIVLLLIGFSVGMSWAMTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECC
ADIPYMISDALMGISDNPLIILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDP
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCH
VHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQHLIKPLLPFYAALLIALMMITYIP
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QISLFVPQLLGLM
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]