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The map label for this gene is yliF [H]

Identifier: 218548530

GI number: 218548530

Start: 1199063

End: 1200574

Strand: Direct

Name: yliF [H]

Synonym: EFER_1160

Alternate gene names: 218548530

Gene position: 1199063-1200574 (Clockwise)

Preceding gene: 218548529

Following gene: 218548531

Centisome position: 26.13

GC content: 36.11

Gene sequence:

>1512_bases
TTGCCCGAGAAGAAAATCTACCCGTTATCGCTGAAGGTGTGGAAACAGAACATCAGGCAAAAGAATTACAAAAATTGGGC
TTCTCACAGGTACAAGGATACCTGTATCAAAAGCCGTTACCATTCTCTGAATGGCATATCGATAGCAAACCACAGAAAAG
AAGTTAAGACAATGTTTAAGTATAAGAATAAAGCAGCAGGTATTAGTGTGCTATGTTTTGTTTTTATATCAGCGATAACA
TGTACGCTATATACTGAAAATGTTAAGAGTAAAATAAACGCCGTAAAAACGGCTATTGTGGATAATGGTCTTTCTGTTGC
CAATGTGTCAGAATATCGGCGTGCTGTCGCGACGAACTTATTAGATAAAATTAATTCTAACCCAGAAGATTTTTTGAACC
ACATTCGGCAAAGTTATGCAGAGCAACCTGCTCCTGGCTATTTGTATGATATAGGTCCATTTTTTATTAATAATGATCAT
TGTATCAATATTACCATGAAAGGTGGTGATTATTGCAAAGAAATAATGACTGCTTTCAAAGTTAATAATCACCACCAGAT
TGGTATTATTAAATTTTCTGGAAAAGGATATGCCTATTATCAACACCCGGTGGGTTACAGAATGTCATTAATATTCGTTG
TTGATCCTGAACGTTATCTTTCGCTGATGAAATTACAGACAGAAAAAAGACAGGATTTATTTATCTCATTATATGATATC
AACGATAATGAGAAACGAATAGCGGGAGACGATTTCTTAATTAGCGACTCTATTTTCCCCATGTCTGCCTCTACACGTGC
CTTATCGTATGTTCCTGACATGATGTTTATTGTGGCCTACAAAAAAAGTAAATATTTCGCCATCTGTTTTATTTTGATTG
CAATCTCAGCCGTGATTACATGGTTGATTTATCATTATCATGTCAAATTATTAAGCAAAATTCTCTATCGCGGACAACTT
GAAAAAGAGGCAATTTTATCAAATCAATTTCATGAGATTAGAGGTGAAAATATATTTTTCTCACCAAGCGAAATTAATAT
GATCCGCGATATTTATGATTTTGGTGCCTATGACAGCCTCACTCGTGCTTCTGTGCGTCGTATTTTCGATAGTGATATTA
ACGACTTGAGTGAAAATTTCGGCTTTTTATGTTTGTTTGATGTGGATAAATTTAAAGTCATCAATGATAAATTTGGTCAT
TTGTTTGGTGATGAAGTGCTGATTAAACTGGTAGGTCTGATTAAAGAACAATTACCATGTGATAAAGGCGATGTTTATCG
TTTTGGTGGCGATGAGTTTGCAATTATCTACCGCGATAATGATTTAAACGCCTTGCTACACATGCTTAGTCATATTGTCA
GATTCAGGATGGGGGGCTTGAATTGTAGTTGCAGTATTGGCATCGCCAGTACTGAGGAGTGTGGCAACAATATTGAACGA
CTGAAAGTGATGGCAGATGAACGGTTATACAAAAGTAAGAAGAACGGCAGGGCACAGATTACCTGGCAATAA

Upstream 100 bases:

>100_bases
AAACTCTACAAAGTTAAACCCGACAGTATCAAAATCGACTCCGAGTTTACTTCCGGGGTATTTGATGAAACCAACCGGAT
AGTATGGTTTATTTCCAGTT

Downstream 100 bases:

>100_bases
TCTGTAAAAATGATGCCGAAATTGTTTCAAATCCGAAAGGAAGTCATTTAAATCCAGGGCTAATTGATGTGAGTATAAAA
TATAAACCACATTATCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MPEKKIYPLSLKVWKQNIRQKNYKNWASHRYKDTCIKSRYHSLNGISIANHRKEVKTMFKYKNKAAGISVLCFVFISAIT
CTLYTENVKSKINAVKTAIVDNGLSVANVSEYRRAVATNLLDKINSNPEDFLNHIRQSYAEQPAPGYLYDIGPFFINNDH
CINITMKGGDYCKEIMTAFKVNNHHQIGIIKFSGKGYAYYQHPVGYRMSLIFVVDPERYLSLMKLQTEKRQDLFISLYDI
NDNEKRIAGDDFLISDSIFPMSASTRALSYVPDMMFIVAYKKSKYFAICFILIAISAVITWLIYHYHVKLLSKILYRGQL
EKEAILSNQFHEIRGENIFFSPSEINMIRDIYDFGAYDSLTRASVRRIFDSDINDLSENFGFLCLFDVDKFKVINDKFGH
LFGDEVLIKLVGLIKEQLPCDKGDVYRFGGDEFAIIYRDNDLNALLHMLSHIVRFRMGGLNCSCSIGIASTEECGNNIER
LKVMADERLYKSKKNGRAQITWQ

Sequences:

>Translated_503_residues
MPEKKIYPLSLKVWKQNIRQKNYKNWASHRYKDTCIKSRYHSLNGISIANHRKEVKTMFKYKNKAAGISVLCFVFISAIT
CTLYTENVKSKINAVKTAIVDNGLSVANVSEYRRAVATNLLDKINSNPEDFLNHIRQSYAEQPAPGYLYDIGPFFINNDH
CINITMKGGDYCKEIMTAFKVNNHHQIGIIKFSGKGYAYYQHPVGYRMSLIFVVDPERYLSLMKLQTEKRQDLFISLYDI
NDNEKRIAGDDFLISDSIFPMSASTRALSYVPDMMFIVAYKKSKYFAICFILIAISAVITWLIYHYHVKLLSKILYRGQL
EKEAILSNQFHEIRGENIFFSPSEINMIRDIYDFGAYDSLTRASVRRIFDSDINDLSENFGFLCLFDVDKFKVINDKFGH
LFGDEVLIKLVGLIKEQLPCDKGDVYRFGGDEFAIIYRDNDLNALLHMLSHIVRFRMGGLNCSCSIGIASTEECGNNIER
LKVMADERLYKSKKNGRAQITWQ
>Mature_502_residues
PEKKIYPLSLKVWKQNIRQKNYKNWASHRYKDTCIKSRYHSLNGISIANHRKEVKTMFKYKNKAAGISVLCFVFISAITC
TLYTENVKSKINAVKTAIVDNGLSVANVSEYRRAVATNLLDKINSNPEDFLNHIRQSYAEQPAPGYLYDIGPFFINNDHC
INITMKGGDYCKEIMTAFKVNNHHQIGIIKFSGKGYAYYQHPVGYRMSLIFVVDPERYLSLMKLQTEKRQDLFISLYDIN
DNEKRIAGDDFLISDSIFPMSASTRALSYVPDMMFIVAYKKSKYFAICFILIAISAVITWLIYHYHVKLLSKILYRGQLE
KEAILSNQFHEIRGENIFFSPSEINMIRDIYDFGAYDSLTRASVRRIFDSDINDLSENFGFLCLFDVDKFKVINDKFGHL
FGDEVLIKLVGLIKEQLPCDKGDVYRFGGDEFAIIYRDNDLNALLHMLSHIVRFRMGGLNCSCSIGIASTEECGNNIERL
KVMADERLYKSKKNGRAQITWQ

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787056, Length=436, Percent_Identity=42.8899082568807, Blast_Score=390, Evalue=1e-109,
Organism=Escherichia coli, GI1787541, Length=155, Percent_Identity=34.8387096774194, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=126, Percent_Identity=36.5079365079365, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=125, Percent_Identity=35.2, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI145693134, Length=131, Percent_Identity=34.3511450381679, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 58009; Mature: 57878

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKKIYPLSLKVWKQNIRQKNYKNWASHRYKDTCIKSRYHSLNGISIANHRKEVKTMFK
CCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
YKNKAAGISVLCFVFISAITCTLYTENVKSKINAVKTAIVDNGLSVANVSEYRRAVATNL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LDKINSNPEDFLNHIRQSYAEQPAPGYLYDIGPFFINNDHCINITMKGGDYCKEIMTAFK
HHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCEEEEEEECCCHHHHHHHHHHH
VNNHHQIGIIKFSGKGYAYYQHPVGYRMSLIFVVDPERYLSLMKLQTEKRQDLFISLYDI
CCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEC
NDNEKRIAGDDFLISDSIFPMSASTRALSYVPDMMFIVAYKKSKYFAICFILIAISAVIT
CCCCCEECCCCEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
WLIYHYHVKLLSKILYRGQLEKEAILSNQFHEIRGENIFFSPSEINMIRDIYDFGAYDSL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCHH
TRASVRRIFDSDINDLSENFGFLCLFDVDKFKVINDKFGHLFGDEVLIKLVGLIKEQLPC
HHHHHHHHHHCHHHHHHHCCCEEEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKGDVYRFGGDEFAIIYRDNDLNALLHMLSHIVRFRMGGLNCSCSIGIASTEECGNNIER
CCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCHHHH
LKVMADERLYKSKKNGRAQITWQ
HHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
PEKKIYPLSLKVWKQNIRQKNYKNWASHRYKDTCIKSRYHSLNGISIANHRKEVKTMFK
CCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
YKNKAAGISVLCFVFISAITCTLYTENVKSKINAVKTAIVDNGLSVANVSEYRRAVATNL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LDKINSNPEDFLNHIRQSYAEQPAPGYLYDIGPFFINNDHCINITMKGGDYCKEIMTAFK
HHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCEEEEEEECCCHHHHHHHHHHH
VNNHHQIGIIKFSGKGYAYYQHPVGYRMSLIFVVDPERYLSLMKLQTEKRQDLFISLYDI
CCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEC
NDNEKRIAGDDFLISDSIFPMSASTRALSYVPDMMFIVAYKKSKYFAICFILIAISAVIT
CCCCCEECCCCEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
WLIYHYHVKLLSKILYRGQLEKEAILSNQFHEIRGENIFFSPSEINMIRDIYDFGAYDSL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCHH
TRASVRRIFDSDINDLSENFGFLCLFDVDKFKVINDKFGHLFGDEVLIKLVGLIKEQLPC
HHHHHHHHHHCHHHHHHHCCCEEEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKGDVYRFGGDEFAIIYRDNDLNALLHMLSHIVRFRMGGLNCSCSIGIASTEECGNNIER
CCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCHHHH
LKVMADERLYKSKKNGRAQITWQ
HHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]