Click here to switch to the map view.

The map label for this gene is ycbC [H]

Identifier: 218531176

GI number: 218531176

Start: 3408684

End: 3409481

Strand: Reverse

Name: ycbC [H]

Synonym: Mchl_3226

Alternate gene names: 218531176

Gene position: 3409481-3408684 (Counterclockwise)

Preceding gene: 218531177

Following gene: 218531168

Centisome position: 59.01

GC content: 69.17

Gene sequence:

>798_bases
ATGTTCTTCCCGCTCTCGAAGCTGATCTTCTTCGTCCTCACGCCGTCGAACTTCCTGATCCTGCTTGGGCTCCTCGGCTG
CCTCCTGCTCTTCACCGAGGCCGGCCGCGGGATCGGACGGGTTCTCACGGTCGCTGGCTTCGTCGGGCTCCTCGTCGCCG
GGCTTTCGCCGCTCTCGGCCTGGACGCTGGCGCCGCTGGAGAACCGGTTTCCGAGCTTCACCGATGACGGCACGCCCGTT
ACCGGCATCGTCGTGCTCGGCGGGACGGTCGAGGCCGATACCTCGATCGGCCGTGACCAGATCACCGTCAACGAGGCGGG
CGAGCGGGCCATCGCCCTGGCCGACCTCGCCCGGCGCTACCCGCAGGCGCGTCTCGTCTTCTCCGGCGGCTCGGGCAGCA
CCCGCGAGGACGCGGTCTCGGAGGCCGAGATCGTCAGCCGTTACGCCGACACGCTCGGCGTGCCGCGCAACCGCCTGATC
CTGGAACAGCAATCGCGCAACACCCACGAGAACGCGGTGTTCTCCGCGCGGATGGTGCAGCCGAAGCCGGGCGAGCGCTG
GCTCCTCGTCACCTCCGCCTGGCACATGCCGCGCTCGATGGGCTGCTTCCGCAAGGCCGGGTTCGACGTCACCGCCTATC
CCGTCGATTACCGCACCAACTGGCCGCGCGACGCCTACCGCCTCGCCAGCTTCGCCTCCGACGGTCTGGGGGAGCTCGAT
ATCGGCGTGAAGGAGTGGATCGGGATGATCGCCTACCGGCTCACCGGCTACACCGACGCGGTGCTGCCGGCGCCGTGA

Upstream 100 bases:

>100_bases
CCCGCCGCCTCGGCCGTTCTGTCGCTGCCGCTCACCTGATTTTCCCGGTGACGCTCAGCCCGTGACGGATGCCGTGTCGA
ACCCTGGACGAAAGAAGACG

Downstream 100 bases:

>100_bases
ACCGCCGTCACGCCCGCGGCAGGCTCAGGCGATAGATCCCGCGGAAATCGTCCGGATCCTCCACCGGCTTGCCCTTGCGC
AGGATCTGCACCCGGCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MFFPLSKLIFFVLTPSNFLILLGLLGCLLLFTEAGRGIGRVLTVAGFVGLLVAGLSPLSAWTLAPLENRFPSFTDDGTPV
TGIVVLGGTVEADTSIGRDQITVNEAGERAIALADLARRYPQARLVFSGGSGSTREDAVSEAEIVSRYADTLGVPRNRLI
LEQQSRNTHENAVFSARMVQPKPGERWLLVTSAWHMPRSMGCFRKAGFDVTAYPVDYRTNWPRDAYRLASFASDGLGELD
IGVKEWIGMIAYRLTGYTDAVLPAP

Sequences:

>Translated_265_residues
MFFPLSKLIFFVLTPSNFLILLGLLGCLLLFTEAGRGIGRVLTVAGFVGLLVAGLSPLSAWTLAPLENRFPSFTDDGTPV
TGIVVLGGTVEADTSIGRDQITVNEAGERAIALADLARRYPQARLVFSGGSGSTREDAVSEAEIVSRYADTLGVPRNRLI
LEQQSRNTHENAVFSARMVQPKPGERWLLVTSAWHMPRSMGCFRKAGFDVTAYPVDYRTNWPRDAYRLASFASDGLGELD
IGVKEWIGMIAYRLTGYTDAVLPAP
>Mature_265_residues
MFFPLSKLIFFVLTPSNFLILLGLLGCLLLFTEAGRGIGRVLTVAGFVGLLVAGLSPLSAWTLAPLENRFPSFTDDGTPV
TGIVVLGGTVEADTSIGRDQITVNEAGERAIALADLARRYPQARLVFSGGSGSTREDAVSEAEIVSRYADTLGVPRNRLI
LEQQSRNTHENAVFSARMVQPKPGERWLLVTSAWHMPRSMGCFRKAGFDVTAYPVDYRTNWPRDAYRLASFASDGLGELD
IGVKEWIGMIAYRLTGYTDAVLPAP

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787150, Length=216, Percent_Identity=31.0185185185185, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 28844; Mature: 28844

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFPLSKLIFFVLTPSNFLILLGLLGCLLLFTEAGRGIGRVLTVAGFVGLLVAGLSPLSA
CCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
WTLAPLENRFPSFTDDGTPVTGIVVLGGTVEADTSIGRDQITVNEAGERAIALADLARRY
EEECCHHHCCCCCCCCCCCEEEEEEECCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHC
PQARLVFSGGSGSTREDAVSEAEIVSRYADTLGVPRNRLILEQQSRNTHENAVFSARMVQ
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHCCCCHHHHEEEEEECC
PKPGERWLLVTSAWHMPRSMGCFRKAGFDVTAYPVDYRTNWPRDAYRLASFASDGLGELD
CCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCC
IGVKEWIGMIAYRLTGYTDAVLPAP
CCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFFPLSKLIFFVLTPSNFLILLGLLGCLLLFTEAGRGIGRVLTVAGFVGLLVAGLSPLSA
CCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
WTLAPLENRFPSFTDDGTPVTGIVVLGGTVEADTSIGRDQITVNEAGERAIALADLARRY
EEECCHHHCCCCCCCCCCCEEEEEEECCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHC
PQARLVFSGGSGSTREDAVSEAEIVSRYADTLGVPRNRLILEQQSRNTHENAVFSARMVQ
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHCCCCHHHHEEEEEECC
PKPGERWLLVTSAWHMPRSMGCFRKAGFDVTAYPVDYRTNWPRDAYRLASFASDGLGELD
CCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCC
IGVKEWIGMIAYRLTGYTDAVLPAP
CCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]