Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 218235147

GI number: 218235147

Start: 3862094

End: 3862609

Strand: Reverse

Name: rimM [H]

Synonym: BCB4264_A3941

Alternate gene names: 218235147

Gene position: 3862609-3862094 (Counterclockwise)

Preceding gene: 218231643

Following gene: 218231101

Centisome position: 71.28

GC content: 36.63

Gene sequence:

>516_bases
ATGACAAAATGGTTTAACGTAGGGAAGATTGTAAATACTCATGGCGTAAGAGGGGAAATCCGTGTTATTTCTCGTACTGA
TTTTCCAGAAGAGCGATATAAAGTAGGAAACACGTTATACATATCGAATGAGAAAGGCACAGACTACCTTCCGGTGAAGG
TAACTTCTCATCGCCAACATAAGACATTCGATTTATTAACATTTGAAGGATATAACAATGTAGATGAAGTAGAGAAGTTT
AAAGGTTCTTTAATAAAAGTACCAGAAGAGCAGTTAGGTGAACTTGCTGAAGGTGAATACTACTATCATGAAATTATTGG
TTGCAGTGTTGTAACGGAAGAAGGAGAAGCGCTAGGGACAATCAAAGAGATTCTATCTCCTGGTGCAAATGATGTTTGGG
TAATTAAACGCCCGAAGGGTCAAGATCTCTTAATTCCTTATATCGATGACGTTGTACTTCAAGTTAATATTGAAAATAAA
TTAGTAACCATTCATGTAATGGAAGGGCTGCTATAA

Upstream 100 bases:

>100_bases
TATTCCTCTCCCTTTTTTAACATTTAAATAGAGAGTGCATGTTCCATCTGTGAAATGGAGATGCTTAATTTATATAGAAA
CCAGGGGTGACATACTATTT

Downstream 100 bases:

>100_bases
TGAAAATTGATATTTTAACGTTGTTCCCAGACATGTTTACCGGTGTATTTGGATCTTCTATATTAAAGAAGGCGCAAGAA
AAAGAAGCGGTAAACCTTCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKGTDYLPVKVTSHRQHKTFDLLTFEGYNNVDEVEKF
KGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEEGEALGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENK
LVTIHVMEGLL

Sequences:

>Translated_171_residues
MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKGTDYLPVKVTSHRQHKTFDLLTFEGYNNVDEVEKF
KGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEEGEALGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENK
LVTIHVMEGLL
>Mature_170_residues
TKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKGTDYLPVKVTSHRQHKTFDLLTFEGYNNVDEVEKFK
GSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEEGEALGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKL
VTIHVMEGLL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=153, Percent_Identity=30.0653594771242, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19451; Mature: 19320

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKGTDYLPVKVTSHRQH
CCCEECCCEEEECCCCCEEEEEEECCCCCHHHHHCCCEEEEECCCCCEEEEEEEECCCCC
KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEEGEALGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHCHHHCCCEEEEEEEEEEEEECCCCHHHH
IKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCC
>Mature Secondary Structure 
TKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKGTDYLPVKVTSHRQH
CCEECCCEEEECCCCCEEEEEEECCCCCHHHHHCCCEEEEECCCCCEEEEEEEECCCCC
KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEEGEALGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHCHHHCCCEEEEEEEEEEEEECCCCHHHH
IKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA