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The map label for this gene is sigM [H]

Identifier: 218232533

GI number: 218232533

Start: 1138317

End: 1138802

Strand: Reverse

Name: sigM [H]

Synonym: BCB4264_A1169

Alternate gene names: 218232533

Gene position: 1138802-1138317 (Counterclockwise)

Preceding gene: 218234007

Following gene: 218233337

Centisome position: 21.01

GC content: 37.24

Gene sequence:

>486_bases
GTGAAACGTAAACAATCATTAGAAGAAATTTACTCAGAGCATATGCAAGATTTATTTCGCTATCTTCTCTCCCTAACCGG
AGATTCCCACTATGCGGAAGATCTCATGCAAGAAACATTTTACCGAATGCTCGTCCATATTGACTATTATAAAGGAGAAG
AAATTAGGCCGTGGTTATTTACAATTGCCTACAATGCCTTTATCGATTGGTATCGAAAAGAAAAAAAGTATAAAACAACT
ACAGTGGAAGAATTCCATTTACCAAACGTGCCAAGTACAGAACATGAATATTTCGTAAAACATGAGATTGCTAGTTGGTT
AGACAGTTTATACGCTCTTCCGCTCGAAAGACGAAATGTCCTACTACTACGAGATTACTATGGATTCTCCTATAAGGAAA
TAGCAGAAATGACTGGTCTCTCATTAGCGAAAGTGAAAATTGAATTACACAGGGGACGGAAAGACACGAAAAGCATAAAG
GAGTGA

Upstream 100 bases:

>100_bases
GAACGCAATCCAATTCTTGACGTTTTTTACTATAATTCCATAAAAAATTGTAACTTTTTTATATGTATTTCGTTGTTATG
TATGAAGGGAGGGAAATGTA

Downstream 100 bases:

>100_bases
TACGGATGGGTTGTACAGAATTTAAAAAACTATGGAAGAAGTATGAAAATGGAACGCTCACGCATGATGAACAAGAACTG
TTAGAAAGTCATATTGAGTC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHYAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTT
TVEEFHLPNVPSTEHEYFVKHEIASWLDSLYALPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKDTKSIK
E

Sequences:

>Translated_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHYAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTT
TVEEFHLPNVPSTEHEYFVKHEIASWLDSLYALPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKDTKSIK
E
>Mature_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHYAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTT
TVEEFHLPNVPSTEHEYFVKHEIASWLDSLYALPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKDTKSIK
E

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19551; Mature: 19551

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHYAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKKYKTTTVEEFHLPNVPSTEHEYFVKHEIASWLDSLYALPLERRNV
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
LLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKDTKSIKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHYAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKKYKTTTVEEFHLPNVPSTEHEYFVKHEIASWLDSLYALPLERRNV
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
LLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKDTKSIKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]