Click here to switch to the map view.

The map label for this gene is yhdL [H]

Identifier: 218233337

GI number: 218233337

Start: 1137187

End: 1138311

Strand: Reverse

Name: yhdL [H]

Synonym: BCB4264_A1168

Alternate gene names: 218233337

Gene position: 1138311-1137187 (Counterclockwise)

Preceding gene: 218232533

Following gene: 218234258

Centisome position: 21.01

GC content: 36.27

Gene sequence:

>1125_bases
ATGGGTTGTACAGAATTTAAAAAACTATGGAAGAAGTATGAAAATGGAACGCTCACGCATGATGAACAAGAACTGTTAGA
AAGTCATATTGAGTCATGTGAAGCGTGTGAAGCTTACTTAGATGAGCTGTTAACAAAAACAGAACCAATTAAGAAAAAGT
TACCTCCAAAAAATCTTAAAATTCCTTTTTGGAGAATTAAGTGGAAACATCGTTTACAAACGTTTGGTTTTATATTATCA
ATTTGCATCGTTATCTATATAATCGGCGGGGTATTATCAGCCTTTTATTTTCAAGCTAATAATGATAAAAGGCTAGAAGA
AATTAGAGAGGTTCCTTCGCTTGCACTTGAAGCAACGATCCCAAATAGCCGTGTTATGGGAGGCGGAACAAGTGTAGAAG
CTTTTTTCCGTACGAATAGCCAATTTGATTTAGTACGAACCGTCGGTAAAAAAGAAATGCCCCTCGGTACAATAGAAACA
AAAAGCTTCTTATCATCTGTAGATGTTACGAAGCGAACTTGGATGAATCCGTTCTATCAACCAAAACTCTTCTTTGTTCA
TCCAAAAACAGAGCAGGGTGATTATTTAAAGGATTCATCAAAAAAAGTATGGGATACACTTGCAAAAGTACATGATGGAA
CCGTTGCAGAAGTAGCAATTTCTTTTGATAAAGCTTACACTTTAAAAGAATTAGAACCGCTTTTATATAGCATATTCGAG
GCACAAGAACTCCCTCCAACTCCTTTATGGTACGCTTTAGATACAGGACAAGAAAGAAAAAATGTAGATGACTATATCCT
ACATGGCGGAGAAGCTATAGGGTTTCCAGAACATGTAAGATTCCTCGATAATGAAACTGACGGGCAGAAAACGCAAGAAG
ACAAAGTAACCGAAATGATGCGCGTCCTTTCTATCCATAAAAAAACGGTAAGCAAAATAGCAGCGCTTTCTGAGAAAGAA
CTAAACTTAGATAAACGTTATCAATATGTAAAGGACAACGGTGTAAAAGTATACGGAATTGTTATTACTGGTCCATCGAA
AGAGTTATTAAAATTACAAAACTCCCCGCACGTACGTTATGCGACTCTTGGAGATATTGAGATTTGGAATTGGTTTGATC
ATTAA

Upstream 100 bases:

>100_bases
ATAAGGAAATAGCAGAAATGACTGGTCTCTCATTAGCGAAAGTGAAAATTGAATTACACAGGGGACGGAAAGACACGAAA
AGCATAAAGGAGTGATACGG

Downstream 100 bases:

>100_bases
TAAAAAAGAAGTAGCGCTCTAAAAACGATGCGCTACTTCTTTTTTAATTCGAAATCACTTTCACATACATCCCTCTCACC
GCTTTTTCATAAGCAATATC

Product: sigma-M negative effector

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MGCTEFKKLWKKYENGTLTHDEQELLESHIESCEACEAYLDELLTKTEPIKKKLPPKNLKIPFWRIKWKHRLQTFGFILS
ICIVIYIIGGVLSAFYFQANNDKRLEEIREVPSLALEATIPNSRVMGGGTSVEAFFRTNSQFDLVRTVGKKEMPLGTIET
KSFLSSVDVTKRTWMNPFYQPKLFFVHPKTEQGDYLKDSSKKVWDTLAKVHDGTVAEVAISFDKAYTLKELEPLLYSIFE
AQELPPTPLWYALDTGQERKNVDDYILHGGEAIGFPEHVRFLDNETDGQKTQEDKVTEMMRVLSIHKKTVSKIAALSEKE
LNLDKRYQYVKDNGVKVYGIVITGPSKELLKLQNSPHVRYATLGDIEIWNWFDH

Sequences:

>Translated_374_residues
MGCTEFKKLWKKYENGTLTHDEQELLESHIESCEACEAYLDELLTKTEPIKKKLPPKNLKIPFWRIKWKHRLQTFGFILS
ICIVIYIIGGVLSAFYFQANNDKRLEEIREVPSLALEATIPNSRVMGGGTSVEAFFRTNSQFDLVRTVGKKEMPLGTIET
KSFLSSVDVTKRTWMNPFYQPKLFFVHPKTEQGDYLKDSSKKVWDTLAKVHDGTVAEVAISFDKAYTLKELEPLLYSIFE
AQELPPTPLWYALDTGQERKNVDDYILHGGEAIGFPEHVRFLDNETDGQKTQEDKVTEMMRVLSIHKKTVSKIAALSEKE
LNLDKRYQYVKDNGVKVYGIVITGPSKELLKLQNSPHVRYATLGDIEIWNWFDH
>Mature_373_residues
GCTEFKKLWKKYENGTLTHDEQELLESHIESCEACEAYLDELLTKTEPIKKKLPPKNLKIPFWRIKWKHRLQTFGFILSI
CIVIYIIGGVLSAFYFQANNDKRLEEIREVPSLALEATIPNSRVMGGGTSVEAFFRTNSQFDLVRTVGKKEMPLGTIETK
SFLSSVDVTKRTWMNPFYQPKLFFVHPKTEQGDYLKDSSKKVWDTLAKVHDGTVAEVAISFDKAYTLKELEPLLYSIFEA
QELPPTPLWYALDTGQERKNVDDYILHGGEAIGFPEHVRFLDNETDGQKTQEDKVTEMMRVLSIHKKTVSKIAALSEKEL
NLDKRYQYVKDNGVKVYGIVITGPSKELLKLQNSPHVRYATLGDIEIWNWFDH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43079; Mature: 42948

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCTEFKKLWKKYENGTLTHDEQELLESHIESCEACEAYLDELLTKTEPIKKKLPPKNLK
CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
IPFWRIKWKHRLQTFGFILSICIVIYIIGGVLSAFYFQANNDKRLEEIREVPSLALEATI
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEC
PNSRVMGGGTSVEAFFRTNSQFDLVRTVGKKEMPLGTIETKSFLSSVDVTKRTWMNPFYQ
CCCEEECCCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PKLFFVHPKTEQGDYLKDSSKKVWDTLAKVHDGTVAEVAISFDKAYTLKELEPLLYSIFE
CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHH
AQELPPTPLWYALDTGQERKNVDDYILHGGEAIGFPEHVRFLDNETDGQKTQEDKVTEMM
HHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
RVLSIHKKTVSKIAALSEKELNLDKRYQYVKDNGVKVYGIVITGPSKELLKLQNSPHVRY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEECCCHHHHHHCCCCCEEE
ATLGDIEIWNWFDH
EEECCEEECCCCCC
>Mature Secondary Structure 
GCTEFKKLWKKYENGTLTHDEQELLESHIESCEACEAYLDELLTKTEPIKKKLPPKNLK
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
IPFWRIKWKHRLQTFGFILSICIVIYIIGGVLSAFYFQANNDKRLEEIREVPSLALEATI
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEC
PNSRVMGGGTSVEAFFRTNSQFDLVRTVGKKEMPLGTIETKSFLSSVDVTKRTWMNPFYQ
CCCEEECCCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PKLFFVHPKTEQGDYLKDSSKKVWDTLAKVHDGTVAEVAISFDKAYTLKELEPLLYSIFE
CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHH
AQELPPTPLWYALDTGQERKNVDDYILHGGEAIGFPEHVRFLDNETDGQKTQEDKVTEMM
HHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
RVLSIHKKTVSKIAALSEKELNLDKRYQYVKDNGVKVYGIVITGPSKELLKLQNSPHVRY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEECCCHHHHHHCCCCCEEE
ATLGDIEIWNWFDH
EEECCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 10216858 [H]