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The map label for this gene is dnaD [H]

Identifier: 218232332

GI number: 218232332

Start: 1528028

End: 1528735

Strand: Direct

Name: dnaD [H]

Synonym: BCB4264_A1602

Alternate gene names: 218232332

Gene position: 1528028-1528735 (Clockwise)

Preceding gene: 218231550

Following gene: 218233114

Centisome position: 28.2

GC content: 33.62

Gene sequence:

>708_bases
ATGAAAAAGAAAATGATGTTACAGTGGTTTGAGCAGGGAAGCATTGCAATTCCAAAATTACTTATGATGCATTATAAAAA
ATTAGGTTTAAATGAGACGGAATTTATGGTCGTACTTCATGTACACACATTTTTAGAATCAGGTAATTCGTTTCCGACTC
CATCAGAGATTTCTGAACGGATGACGATAACGGAAATGAAATGTATGGAAGTAATTCAAGCATTGATTCAAAAAGGGTTT
TTATCACTAGAAGGTGGACAAAGATCAGAAGCGATGATGTGCGAAAGTTATTCTTTACAACCGTTATGGGAAAAAATATT
ACATTTCTTAATGGATGAATCAATAGAGGAAGAGCAAAAAGAAAAAAAACAGCTGCAAGTAAATTTATATACAGTATTTG
AAAAAGAATTTGGAAGACCACTTTCACCGTTCGAATGTGAAACGTTAGGAATGTGGGAGGACCAAGATCAACATCATCCA
AATTTAATTCAAGCGGCTCTTAGAGAAGCTGTAATGAGTGGAAAACTAAATTTCCGATATATTGATCGTATTTTATTTGA
GTGGAAAAAGAATGGAATTAAAACGGTAGATCAGGCTCAAAATCAAGGTCAAAAATTTAGAGCGAATCAACAAAGAGCAC
AACAAATGACAAAACAAGAGACGAAATTTACTGGAAAAGTGCCTTTTTATAATTGGTTGGAGCAGTAA

Upstream 100 bases:

>100_bases
ATATAAAAAACCTCCCCATTAATAGGGAGGTTTTTTTGACGAATTGTGGCAAAAAGAAATAGCTAAAGGTGTGTTATACT
AGAGAGCGAGGTGTTTGGTG

Downstream 100 bases:

>100_bases
TATAGGAGGAAGTATATGTTAAATAAAACGCAAATTCGCTATTGTTTAGACACAATGGCGGATATGTATCCAGAAGCACA
TTGTGAATTAATTCATGAGA

Product: DNA replication protein DnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISERMTITEMKCMEVIQALIQKGF
LSLEGGQRSEAMMCESYSLQPLWEKILHFLMDESIEEEQKEKKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHP
NLIQAALREAVMSGKLNFRYIDRILFEWKKNGIKTVDQAQNQGQKFRANQQRAQQMTKQETKFTGKVPFYNWLEQ

Sequences:

>Translated_235_residues
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISERMTITEMKCMEVIQALIQKGF
LSLEGGQRSEAMMCESYSLQPLWEKILHFLMDESIEEEQKEKKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHP
NLIQAALREAVMSGKLNFRYIDRILFEWKKNGIKTVDQAQNQGQKFRANQQRAQQMTKQETKFTGKVPFYNWLEQ
>Mature_235_residues
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISERMTITEMKCMEVIQALIQKGF
LSLEGGQRSEAMMCESYSLQPLWEKILHFLMDESIEEEQKEKKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHP
NLIQAALREAVMSGKLNFRYIDRILFEWKKNGIKTVDQAQNQGQKFRANQQRAQQMTKQETKFTGKVPFYNWLEQ

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27757; Mature: 27757

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISER
CCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
MTITEMKCMEVIQALIQKGFLSLEGGQRSEAMMCESYSLQPLWEKILHFLMDESIEEEQK
HHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
EKKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHPNLIQAALREAVMSGKLNFRY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
IDRILFEWKKNGIKTVDQAQNQGQKFRANQQRAQQMTKQETKFTGKVPFYNWLEQ
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC
>Mature Secondary Structure
MKKKMMLQWFEQGSIAIPKLLMMHYKKLGLNETEFMVVLHVHTFLESGNSFPTPSEISER
CCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
MTITEMKCMEVIQALIQKGFLSLEGGQRSEAMMCESYSLQPLWEKILHFLMDESIEEEQK
HHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
EKKQLQVNLYTVFEKEFGRPLSPFECETLGMWEDQDQHHPNLIQAALREAVMSGKLNFRY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
IDRILFEWKKNGIKTVDQAQNQGQKFRANQQRAQQMTKQETKFTGKVPFYNWLEQ
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]