BacMap

Definition	Bacillus cereus B4264, complete genome.
Accession	NC_011725
Length	5,419,036

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The map label for this gene is yhdH [H]

Identifier: 218231579

GI number: 218231579

Start: 1421202

End: 1422560

Strand: Direct

Name: yhdH [H]

Synonym: BCB4264_A1484

Alternate gene names: 218231579

Gene position: 1421202-1422560 (Clockwise)

Preceding gene: 218234578

Following gene: 218234135

Centisome position: 26.23

GC content: 35.76

Gene sequence:

>1359_bases
ATGATGAAAGAAACACAGCAATGGACGTCGAAAATAGGCTTTGTACTCGCAGCAGCCGGAGCCGCAGTAGGTCTTGGTGC
GATATGGAAATTTCCATATGTTGCAGGTAATGGCGGGGGAGGCGCATTCTTCCTTGTATTTTTACTATTAACTTTATTTA
TAGGTATGCCTCTTCTAATAGCGGAGTTTGTTATTGGACGTAGCACGCAAAAAGAGGCGGTTACAGCTTATAAAGTACTA
GTGCCAAATAGCAAAGTATATCCTTGGATTGGTCGTATGGGAGTTGTTACTTGTTTTAGTGTACTATCTTTTTATAGTGT
TGTAGGTGGATGGATTTTACTTTATTTATATTATAGTGTGACAGGAAGTTTCTGGAATGGAGCAGCTGATTATGGACAAT
TGTTCGGTGAAACGATTTCAAATCCGTTAAGTGCGATTGGAGCACAATTTATCTTTATGCTTTGTACAATTTTTGTCGTA
AGTAAAGGTGTAGAGAAAGGTATAGAAAAGGCAAGTAAGTACATGATGCCGCTATTATTTATTTTATTTATTGCGATTAT
TGTTCGTGCGTTAACACTCGATGGTGCTTTTGCTGGAGTAGAGTTCTTCTTAAAGCCAGATTTTTCAAAGCTTACAGCAG
ATACGATTTTATACGCGATGGGACAATCTTTCTTCTCACTAACAGTAGGTGCCTCAGTAATGGTCACGTATAGTTCGTAT
TTAAAGAAAGAGGAACATTTAGCGAAATCAGCAACATCTATTGTAAGTTTAACTGTTTTTGTTACAGTACTTGCAGGATT
AGCAATTTTCCCAGCGATTTTCGCATTAGGAGTAAAACCAACTGAAGGACCAGGATTACTGTTTATCGTCCTTCCAGCAG
TATTTGCAAAAATACCATTTGGTCAATTTTTCTTTATTATGTTTTTAATTTTATTCTTCTTTGCGACTTTAACATCAGCA
ATTTCAATGCTTGAAATTGTAGTAGCATCTGTTGCGAAAGGTAATGAGAAGAAGCGTCCGTCAGCATCATTATTAATTGG
TATTCTTATTTTTGCAGTCGGTATTCCATCAGCGTTATCATTTGGGATTATGAGTGACGTGAAAATATTTGGGAAAACGT
TCTTTGATTTAGTCGACTTTTCGGTAAGTAACGTATTGCTACCGTTAGGAGTACTAGCTATTTCATTATTTGTACCAAAT
AAAATGAGTAAAGAATTGTTGATGAAAGAATTAGAAGTGACGGAAACGAAAGGGAAAACGTTATTTAACATTTGGTTCTT
CTTACTTCGTTATGTTATTCCGGTAACTGTAATAATTGTATTTTTAAATGCGATAGGTGTATTTAAAATGTTTGCATAA

Upstream 100 bases:

>100_bases
TTGCGTGTAGGGGACTTTTTTATTTTCTAAAGGAGGTGTGCGAGTATGAAATGAAAGTGTATAATTAACAAAAGTTTAAA
TATTCAGAAAAGGAGAAATT

Downstream 100 bases:

>100_bases
AAAAAAGGCGGGGATCTCCCGTCTTTTTTTATGTTGATGAATGTAATAGACGATTATACGCTTTATAGGCTGTGGTGACT
GCGAGGAATGAACCGATTAA

Product: putative sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MMKETQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLIAEFVIGRSTQKEAVTAYKVL
VPNSKVYPWIGRMGVVTCFSVLSFYSVVGGWILLYLYYSVTGSFWNGAADYGQLFGETISNPLSAIGAQFIFMLCTIFVV
SKGVEKGIEKASKYMMPLLFILFIAIIVRALTLDGAFAGVEFFLKPDFSKLTADTILYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFVTVLAGLAIFPAIFALGVKPTEGPGLLFIVLPAVFAKIPFGQFFFIMFLILFFFATLTSA
ISMLEIVVASVAKGNEKKRPSASLLIGILIFAVGIPSALSFGIMSDVKIFGKTFFDLVDFSVSNVLLPLGVLAISLFVPN
KMSKELLMKELEVTETKGKTLFNIWFFLLRYVIPVTVIIVFLNAIGVFKMFA

Sequences:

>Translated_452_residues
MMKETQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLIAEFVIGRSTQKEAVTAYKVL
VPNSKVYPWIGRMGVVTCFSVLSFYSVVGGWILLYLYYSVTGSFWNGAADYGQLFGETISNPLSAIGAQFIFMLCTIFVV
SKGVEKGIEKASKYMMPLLFILFIAIIVRALTLDGAFAGVEFFLKPDFSKLTADTILYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFVTVLAGLAIFPAIFALGVKPTEGPGLLFIVLPAVFAKIPFGQFFFIMFLILFFFATLTSA
ISMLEIVVASVAKGNEKKRPSASLLIGILIFAVGIPSALSFGIMSDVKIFGKTFFDLVDFSVSNVLLPLGVLAISLFVPN
KMSKELLMKELEVTETKGKTLFNIWFFLLRYVIPVTVIIVFLNAIGVFKMFA
>Mature_452_residues
MMKETQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLIAEFVIGRSTQKEAVTAYKVL
VPNSKVYPWIGRMGVVTCFSVLSFYSVVGGWILLYLYYSVTGSFWNGAADYGQLFGETISNPLSAIGAQFIFMLCTIFVV
SKGVEKGIEKASKYMMPLLFILFIAIIVRALTLDGAFAGVEFFLKPDFSKLTADTILYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFVTVLAGLAIFPAIFALGVKPTEGPGLLFIVLPAVFAKIPFGQFFFIMFLILFFFATLTSA
ISMLEIVVASVAKGNEKKRPSASLLIGILIFAVGIPSALSFGIMSDVKIFGKTFFDLVDFSVSNVLLPLGVLAISLFVPN
KMSKELLMKELEVTETKGKTLFNIWFFLLRYVIPVTVIIVFLNAIGVFKMFA

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI171184408, Length=403, Percent_Identity=27.2952853598015, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI171184406, Length=403, Percent_Identity=27.2952853598015, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI171184404, Length=403, Percent_Identity=27.2952853598015, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI4507043, Length=376, Percent_Identity=27.9255319148936, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI21361581, Length=406, Percent_Identity=25.8620689655172, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI289191377, Length=386, Percent_Identity=26.1658031088083, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI289191351, Length=386, Percent_Identity=26.1658031088083, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI4557046, Length=386, Percent_Identity=26.1658031088083, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI4507041, Length=383, Percent_Identity=26.6318537859008, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI7657587, Length=380, Percent_Identity=25, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI92859670, Length=445, Percent_Identity=24.4943820224719, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI51468073, Length=296, Percent_Identity=28.3783783783784, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI197276623, Length=351, Percent_Identity=24.7863247863248, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI54607094, Length=351, Percent_Identity=24.7863247863248, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI134304856, Length=401, Percent_Identity=25.4364089775561, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI33354281, Length=298, Percent_Identity=26.8456375838926, Blast_Score=106, Evalue=6e-23,
Organism=Homo sapiens, GI58219014, Length=300, Percent_Identity=27, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI188528618, Length=373, Percent_Identity=22.7882037533512, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI67782317, Length=424, Percent_Identity=23.8207547169811, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI67782313, Length=424, Percent_Identity=24.2924528301887, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI67782315, Length=424, Percent_Identity=24.2924528301887, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI194018524, Length=298, Percent_Identity=26.8456375838926, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI11181770, Length=298, Percent_Identity=26.1744966442953, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI21361693, Length=117, Percent_Identity=35.042735042735, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI5032097, Length=350, Percent_Identity=24, Blast_Score=83, Evalue=7e-16,
Organism=Homo sapiens, GI218563756, Length=342, Percent_Identity=24.5614035087719, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI12408638, Length=273, Percent_Identity=24.9084249084249, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI197276625, Length=116, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI289191353, Length=212, Percent_Identity=26.8867924528302, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI55749589, Length=115, Percent_Identity=29.5652173913043, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=412, Percent_Identity=25.2427184466019, Blast_Score=121, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17554804, Length=469, Percent_Identity=23.2409381663113, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71995588, Length=416, Percent_Identity=22.8365384615385, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI133952791, Length=155, Percent_Identity=31.6129032258064, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17555248, Length=114, Percent_Identity=37.719298245614, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI115534083, Length=435, Percent_Identity=22.7586206896552, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17569475, Length=376, Percent_Identity=21.2765957446809, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17542050, Length=145, Percent_Identity=30.3448275862069, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17136952, Length=437, Percent_Identity=26.7734553775744, Blast_Score=151, Evalue=1e-36,
Organism=Drosophila melanogaster, GI281364394, Length=440, Percent_Identity=26.1363636363636, Blast_Score=149, Evalue=4e-36,
Organism=Drosophila melanogaster, GI28574704, Length=440, Percent_Identity=26.1363636363636, Blast_Score=149, Evalue=4e-36,
Organism=Drosophila melanogaster, GI17136950, Length=440, Percent_Identity=26.1363636363636, Blast_Score=149, Evalue=4e-36,
Organism=Drosophila melanogaster, GI28574702, Length=440, Percent_Identity=26.1363636363636, Blast_Score=149, Evalue=4e-36,
Organism=Drosophila melanogaster, GI24762620, Length=413, Percent_Identity=26.8765133171913, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281365034, Length=417, Percent_Identity=25.6594724220624, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI19921936, Length=403, Percent_Identity=26.0545905707196, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI45551088, Length=437, Percent_Identity=25.629290617849, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24652942, Length=437, Percent_Identity=25.629290617849, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45551183, Length=419, Percent_Identity=23.3890214797136, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI45550877, Length=419, Percent_Identity=23.1503579952267, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24661428, Length=376, Percent_Identity=26.063829787234, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24582567, Length=371, Percent_Identity=26.1455525606469, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24639514, Length=507, Percent_Identity=24.2603550295858, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI281363702, Length=361, Percent_Identity=26.8698060941828, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI221329674, Length=507, Percent_Identity=24.4575936883629, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI281364136, Length=402, Percent_Identity=24.8756218905473, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24639516, Length=301, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI281363700, Length=337, Percent_Identity=27.0029673590504, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=26.9360269360269, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24654186, Length=229, Percent_Identity=28.82096069869, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI19921352, Length=222, Percent_Identity=28.8288288288288, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584353, Length=222, Percent_Identity=28.8288288288288, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639853, Length=401, Percent_Identity=22.4438902743142, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24582569, Length=336, Percent_Identity=24.1071428571429, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49187; Mature: 49187

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]