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The map label for this gene is ylmD [H]

Identifier: 218231504

GI number: 218231504

Start: 3923422

End: 3924240

Strand: Reverse

Name: ylmD [H]

Synonym: BCB4264_A4002

Alternate gene names: 218231504

Gene position: 3924240-3923422 (Counterclockwise)

Preceding gene: 218230763

Following gene: 218235156

Centisome position: 72.42

GC content: 38.58

Gene sequence:

>819_bases
ATGAGAGAACCATTTAAATATGTGGACGGTATACTGTATTTACAAGCGTGGAAAGAACTTGGAAACATTACTGCTGGATT
TACGACAAAAGATGGTGGGATAAGTACGGGCTCCTTTCATGCGATGAATTTAGGATTACATGTGAATGATATCGTGGAGA
ACGTTCATGAAAACAGACGCATTTTAGCAAATAAGTTACAAAAACCATTAGAAAACTGGATTTGCTCTGAACAAGTTCAT
GCTCATCATGTTGAAAAAGTAGGGCAACAGGAAAAGGGAAGTGGTGTCTATTCATATGAGGACGGCATTTCAAAAACAGA
TGGCATTTATACGAGTAATGAAGATGTTCTGTTAACGTCTTGTTACGCGGATTGTGTTCCGCTCTATTTTTATGCACCAT
CACATGGTATGATAGGACTTGCGCATGCTGGATGGAAAGGCACTGTACAAGAGATTGCAAAGGAAATGATTCAAAAGTGG
AATGCAGAAGGTATTTCAAGTGATGAAATTCATGTTGCAATTGGGCCGTCGATCGGATCTTGTTGTTATGTTGTGGATGA
TCGTGTATTAACAGCAGCACAGGAAGTAGTTAGCGGTGCTGTTCCTCATCAAAAAATTTCTGACGGGCAGTACGCAATTA
ATTTAAAAGAAATTAATCGTATATTATGTGTACAAGCAGGCATAAAAGAAGAGCATATTGTAATGTCATCTCTTTGTACA
AGCTGTGAAGAGCAACTATTTTTCTCTCATCGTCGTGATCAAGGTAAGACAGGAAGAATGTTGAGTTTCATAGGTTTTAA
GGAGGAAGGAAGCAAGTGA

Upstream 100 bases:

>100_bases
TTTTTTTCTGTTAGGATTATGAAAAAATAAAAGTATGGTAAAATAGACAGGAAGTACCATGCTTTTTTCTGTTATTTTAA
TTAAAAGGAGCCGCTTTATT

Downstream 100 bases:

>100_bases
CAGTACAAGAAAATTTAGTAATTGTAAACGAAGCTATTAAAGAATCTTGCGCTCGAGCTGGACGTTCGTTGCAAGATATT
AAACTTGTTGCAGTTACAAA

Product: conserved hypothetical protein TIGR00726

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGISTGSFHAMNLGLHVNDIVENVHENRRILANKLQKPLENWICSEQVH
AHHVEKVGQQEKGSGVYSYEDGISKTDGIYTSNEDVLLTSCYADCVPLYFYAPSHGMIGLAHAGWKGTVQEIAKEMIQKW
NAEGISSDEIHVAIGPSIGSCCYVVDDRVLTAAQEVVSGAVPHQKISDGQYAINLKEINRILCVQAGIKEEHIVMSSLCT
SCEEQLFFSHRRDQGKTGRMLSFIGFKEEGSK

Sequences:

>Translated_272_residues
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGISTGSFHAMNLGLHVNDIVENVHENRRILANKLQKPLENWICSEQVH
AHHVEKVGQQEKGSGVYSYEDGISKTDGIYTSNEDVLLTSCYADCVPLYFYAPSHGMIGLAHAGWKGTVQEIAKEMIQKW
NAEGISSDEIHVAIGPSIGSCCYVVDDRVLTAAQEVVSGAVPHQKISDGQYAINLKEINRILCVQAGIKEEHIVMSSLCT
SCEEQLFFSHRRDQGKTGRMLSFIGFKEEGSK
>Mature_272_residues
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGISTGSFHAMNLGLHVNDIVENVHENRRILANKLQKPLENWICSEQVH
AHHVEKVGQQEKGSGVYSYEDGISKTDGIYTSNEDVLLTSCYADCVPLYFYAPSHGMIGLAHAGWKGTVQEIAKEMIQKW
NAEGISSDEIHVAIGPSIGSCCYVVDDRVLTAAQEVVSGAVPHQKISDGQYAINLKEINRILCVQAGIKEEHIVMSSLCT
SCEEQLFFSHRRDQGKTGRMLSFIGFKEEGSK

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=251, Percent_Identity=33.0677290836653, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI190194372, Length=251, Percent_Identity=33.0677290836653, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI1788945, Length=256, Percent_Identity=28.515625, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 30125; Mature: 30125

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGISTGSFHAMNLGLHVNDIVENVHENRR
CCCHHHHHHHHHHHHHHHHHCCEECCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
ILANKLQKPLENWICSEQVHAHHVEKVGQQEKGSGVYSYEDGISKTDGIYTSNEDVLLTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCCCCCCEEECCCCEEEEE
CYADCVPLYFYAPSHGMIGLAHAGWKGTVQEIAKEMIQKWNAEGISSDEIHVAIGPSIGS
HHHHHEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
CCYVVDDRVLTAAQEVVSGAVPHQKISDGQYAINLKEINRILCVQAGIKEEHIVMSSLCT
EEEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH
SCEEQLFFSHRRDQGKTGRMLSFIGFKEEGSK
HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGISTGSFHAMNLGLHVNDIVENVHENRR
CCCHHHHHHHHHHHHHHHHHCCEECCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
ILANKLQKPLENWICSEQVHAHHVEKVGQQEKGSGVYSYEDGISKTDGIYTSNEDVLLTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCCCCCCEEECCCCEEEEE
CYADCVPLYFYAPSHGMIGLAHAGWKGTVQEIAKEMIQKWNAEGISSDEIHVAIGPSIGS
HHHHHEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
CCYVVDDRVLTAAQEVVSGAVPHQKISDGQYAINLKEINRILCVQAGIKEEHIVMSSLCT
EEEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH
SCEEQLFFSHRRDQGKTGRMLSFIGFKEEGSK
HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]