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The map label for this gene is ylmE [H]

Identifier: 218235156

GI number: 218235156

Start: 3922751

End: 3923425

Strand: Reverse

Name: ylmE [H]

Synonym: BCB4264_A4001

Alternate gene names: 218235156

Gene position: 3923425-3922751 (Counterclockwise)

Preceding gene: 218231504

Following gene: 218233908

Centisome position: 72.4

GC content: 35.26

Gene sequence:

>675_bases
GTGACAGTACAAGAAAATTTAGTAATTGTAAACGAAGCTATTAAAGAATCTTGCGCTCGAGCTGGACGTTCGTTGCAAGA
TATTAAACTTGTTGCAGTTACAAAAACTGTAGGGATTGAAAAAACAAACGAAGTAATTGAAGCTGGAATTATCGATTTAG
GTGAAAATAGAAATGAAGGTTTCTTACAGAAATACGAGCATTTCGGTTCAAAAGTTAATTGGCACTTTATTGGCTCATTA
CAAACGAGAAAAGTAAAAGAAATCATTAATGAAATTGATTATTTACATTCGTTAGATCGTCTTTCGCTGGCGAAAGAAAT
TCAGAAACGTGCTGATAAGAAAGTGAAATGCTTTATTCAAGTGAAAACCTCATCTGAAGAATCGAAGCAAGGATTGGCAA
TAGAAGAGGTTGTTTCTTTTATTCAAAGTTTGCAAGAATTCGATAAAATTGAAGTGGTTGGACTAATGACGATGGCTCCG
TTTACAGAAGAAGAGGAAGAAATTAGACGCTGTTTTAAGGAATTACGTATGCTGCAAACAGAGGTGCAGGAGCTAGAGTT
ATTACATGCGCCATGTAAAGAATTATCAATGGGAATGTCCAACGATTACACAATTGCAATTGAAGAAGGGGCTACATATA
TTCGTTTGGGAACGATTTTAGTAGGAAAAGCGTAA

Upstream 100 bases:

>100_bases
GTACAAGCTGTGAAGAGCAACTATTTTTCTCTCATCGTCGTGATCAAGGTAAGACAGGAAGAATGTTGAGTTTCATAGGT
TTTAAGGAGGAAGGAAGCAA

Downstream 100 bases:

>100_bases
AAGGAAGGAGAATCTTATTATGAGTTGGTCAAAAGTAAAATACTTCTTTTTTGATACACCGGAAGAAAAAGAAGCAGCTC
AATATGGTTATGAAAAGGAG

Product: conserved hypothetical protein TIGR00044

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVNWHFIGSL
QTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAP
FTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA

Sequences:

>Translated_224_residues
MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVNWHFIGSL
QTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAP
FTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
>Mature_223_residues
TVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVNWHFIGSLQ
TRKVKEIINEIDYLHSLDRLSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPF
TEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=232, Percent_Identity=31.4655172413793, Blast_Score=101, Evalue=5e-22,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=32.4561403508772, Blast_Score=119, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=241, Percent_Identity=29.045643153527, Blast_Score=78, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6319435, Length=211, Percent_Identity=29.8578199052133, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI45550861, Length=219, Percent_Identity=28.310502283105, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25425; Mature: 25293

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG
CCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCH
FLQKYEHFGSKVNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKKVKCFIQ
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQT
EECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
HHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEEEEEECCC
>Mature Secondary Structure 
TVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG
CCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCH
FLQKYEHFGSKVNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKKVKCFIQ
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQT
EECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
HHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]