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The map label for this gene is ctc

Identifier: 21674184

GI number: 21674184

Start: 1281772

End: 1282371

Strand: Direct

Name: ctc

Synonym: CT1362

Alternate gene names: 21674184

Gene position: 1281772-1282371 (Clockwise)

Preceding gene: 21674183

Following gene: 21674186

Centisome position: 59.48

GC content: 56.83

Gene sequence:

>600_bases
ATGGAAACAAGAGCATTGTCTGTAAACCTTCGCGAGGTCAAGAAAAACGGGGCCGCAAAACTGCGCCGCCTGGGTCAGGT
ACCCGCCGTCGTCTACCATAAAGGAGAAGCCACCGTTGCCATCAGCGTCGAGGAAATCAGCCTCAACAAGCTTGTTCACT
CGTCTGAGTCGCACATGATCGACCTTCAGTACCCAGATGGAAAGTCTGTCCGCTCGTTCATCAAGGACGTGCAGTTCGAC
CCGGTGACCGACCGCGTCATCCACGCCGACTTCCAGCTCTTCTCGACTGACGAAGTGGTTGAAATGGAGGTGCCGATCCA
CCTCGAAGGCGAGTGCCCTGGCGTGAAGATCGGTGGCGGCAAGATCCAGATCAACGTGCACACCCTGCCGCTGAAGGGCA
AACCTGAGGCTATGCCGGAGCACTTCACCATCGATGTCTCTGCTCTCGAACTGGGCCAGACCCTGCATATTCGCGATCTT
CAGGCAATCGCACCGGAAGGCGTCCAGATTCTCGGTGATGCCGACACATCAGTAGTATCAGTTGTAGCTCCGAGGAAAGA
GGCTGAAACCGCTGCTGAAGGAGCCACCGCTGAGGCCTGA

Upstream 100 bases:

>100_bases
AGTCGGTCAGCTATCTGTTCGACAGCAAGAACATATCGCAAAAAATTACCAATCACCATTAATACAAGCGTTAACTGTTA
AAGGAACCAGAGGAAATAGC

Downstream 100 bases:

>100_bases
TTCACCTTCGAACGATTTGCAAATTCAAAAAAGCCACCTTTTTCAAAAAAGGCGGCTTTTTTTACGGATTGCCGTTTGCA
AATCGTGCAGCAAGTGTCGT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
METRALSVNLREVKKNGAAKLRRLGQVPAVVYHKGEATVAISVEEISLNKLVHSSESHMIDLQYPDGKSVRSFIKDVQFD
PVTDRVIHADFQLFSTDEVVEMEVPIHLEGECPGVKIGGGKIQINVHTLPLKGKPEAMPEHFTIDVSALELGQTLHIRDL
QAIAPEGVQILGDADTSVVSVVAPRKEAETAAEGATAEA

Sequences:

>Translated_199_residues
METRALSVNLREVKKNGAAKLRRLGQVPAVVYHKGEATVAISVEEISLNKLVHSSESHMIDLQYPDGKSVRSFIKDVQFD
PVTDRVIHADFQLFSTDEVVEMEVPIHLEGECPGVKIGGGKIQINVHTLPLKGKPEAMPEHFTIDVSALELGQTLHIRDL
QAIAPEGVQILGDADTSVVSVVAPRKEAETAAEGATAEA
>Mature_199_residues
METRALSVNLREVKKNGAAKLRRLGQVPAVVYHKGEATVAISVEEISLNKLVHSSESHMIDLQYPDGKSVRSFIKDVQFD
PVTDRVIHADFQLFSTDEVVEMEVPIHLEGECPGVKIGGGKIQINVHTLPLKGKPEAMPEHFTIDVSALELGQTLHIRDL
QAIAPEGVQILGDADTSVVSVVAPRKEAETAAEGATAEA

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CHLTE (Q8KCQ1)

Other databases:

- EMBL:   AE006470
- RefSeq:   NP_662249.1
- ProteinModelPortal:   Q8KCQ1
- SMR:   Q8KCQ1
- GeneID:   1006739
- GenomeReviews:   AE006470_GR
- KEGG:   cte:CT1362
- NMPDR:   fig|194439.1.peg.1343
- TIGR:   CT1362
- HOGENOM:   HBG731986
- OMA:   ELIMKKG
- ProtClustDB:   PRK05618
- BioCyc:   CTEP194439:CT_1362-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21532; Mature: 21532

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRALSVNLREVKKNGAAKLRRLGQVPAVVYHKGEATVAISVEEISLNKLVHSSESHMI
CCCEEEEEEHHHHHCCCHHHHHHHCCCCEEEEECCCEEEEEEEEEEEHHHHHCCCCCCEE
DLQYPDGKSVRSFIKDVQFDPVTDRVIHADFQLFSTDEVVEMEVPIHLEGECPGVKIGGG
EEECCCCHHHHHHHHHCCCCCCCCEEEEECEEEECCCCEEEEEECEEECCCCCEEEECCC
KIQINVHTLPLKGKPEAMPEHFTIDVSALELGQTLHIRDLQAIAPEGVQILGDADTSVVS
EEEEEEEEEECCCCCCCCCCEEEEEEEHHHCCCEEEEECHHHCCCCCEEEEECCCCEEEE
VVAPRKEAETAAEGATAEA
EECCCCHHHHHHCCCCCCC
>Mature Secondary Structure
METRALSVNLREVKKNGAAKLRRLGQVPAVVYHKGEATVAISVEEISLNKLVHSSESHMI
CCCEEEEEEHHHHHCCCHHHHHHHCCCCEEEEECCCEEEEEEEEEEEHHHHHCCCCCCEE
DLQYPDGKSVRSFIKDVQFDPVTDRVIHADFQLFSTDEVVEMEVPIHLEGECPGVKIGGG
EEECCCCHHHHHHHHHCCCCCCCCEEEEECEEEECCCCEEEEEECEEECCCCCEEEECCC
KIQINVHTLPLKGKPEAMPEHFTIDVSALELGQTLHIRDLQAIAPEGVQILGDADTSVVS
EEEEEEEEEECCCCCCCCCCEEEEEEEHHHCCCEEEEECHHHCCCCCEEEEECCCCEEEE
VVAPRKEAETAAEGATAEA
EECCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901