| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is purT
Identifier: 21673886
GI number: 21673886
Start: 996939
End: 998117
Strand: Direct
Name: purT
Synonym: CT1060
Alternate gene names: 21673886
Gene position: 996939-998117 (Clockwise)
Preceding gene: 21673885
Following gene: 21673889
Centisome position: 46.26
GC content: 63.36
Gene sequence:
>1179_bases ATGCCGAAAACAATCATGCTGCTGGGCAGCGGGGAGCTGGGCAAAGAGTTCGTGATTGCCGTCAAGCGGCTGGGGCAGCG GGTGGTCGCCGTGGACAGTTACGACGATGCGCCCGCGCAGCAGGTGGCCGACAGGCGCGAGGTGATCGACATGCTCGACG GCCGGGCGCTCGACGCCATCGTCGCCAAGCACCGGCCCGACATCATCGTTCCGGAGATCGAGGCGATTCGCACCGAGCGA TTCTACGATTATGAAAAGCAGGGGATTCAGGTGGTGCCCTCCGCGAGGGCGGCCAATTTTACGATGAACCGCAAGGCGAT CCGAGACCTTGCTGCCCGCGATCTCGGCTTGCGTACGGCGAACTACCGCTATGCCTCCTCGCTTGAAGAGTTGCGGTCGG CAGTGGGTGAAGTTGGCCTGCCCTGCGTGGTCAAGCCGCTGATGAGTTCGTCGGGCAAGGGGCAATCGACGGTGCGGAGC GAGGCGGAGATCGAGGCGGCGTGGAGCTACTCGCAGAGCGGCAAGCGCGGCGACATCGCCGAGGTGATCGTCGAGGCTTT CGTGCCGTTCCATACCGAAATTACGCTCTTGACCGTGACGCAAAAGAATGGCCCAACGCTCTTCTGCCCGCCCATCGGCC ACCGGCAGGAGCGCGGCGACTATCAGGAGAGCTGGCAGCCGTGCCGCATCAGCCCGGAGCAACTGGAAGAGGCGCAGAAT ATCGCGGGCAAAGTGACCGAGGCCTTGACCGGGGCGGGCATCTGGGGCGTGGAGTTTTTCCTTGCCGACGACGGCGTCTA CTTTTCGGAGCTTTCGCCGCGGCCGCACGATACCGGCATGGTGACGCTCGCCGGAACGCAGAACCTCTCGGAGTTCGAGC TGCACGCCCGCGCGGTGCTCGGCTTGCCGGTTCCAGATATCACGTTGCTCCGCGCCGGAGCGAGCGCCGTGATTCTCGCT GACAGGGTGGGCAACAATCCGTCGTTTGATGGTCTGGATGCGGCGCTGGCGGAGCCGGGCAGCGACATCCGGATTTTCGG CAAGCCGGTGATGCGTCCATACCGGCGTATGGGCGTAGCGCTTATGTCGGGTGAAAAGGGAAGCGATGTCGATGAGCTGA AGCGGCAGGCGATTGCCAATGCCGAGAAAGTGATGATCAAGTGTGACGAGACGGTGTGA
Upstream 100 bases:
>100_bases TGCACTGGACATCAAAGATTACGGCAAAGGAAAAGGCCCGTGAGTGGTTTGCCCAGATCAAGGCGAAAGGATTTTACAAG TATCAAAAATAAAAAGAGTT
Downstream 100 bases:
>100_bases AAAATTTCATCACACTTGACCGAGTCGTTTTAACGCATGTCAGTCCGCGATGGCGGAATCGGCGGATGGCTGCGTGGATT GCTTCAGGCTGGAGGTGCGT
Product: phosphoribosylglycinamide formyltransferase 2
Products: 5'-Phosphoribosyl-N-Formylglycinamide; Pyrophosphate; acetylphosphate; ADP [C]
Alternate protein names: GART 2; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MPKTIMLLGSGELGKEFVIAVKRLGQRVVAVDSYDDAPAQQVADRREVIDMLDGRALDAIVAKHRPDIIVPEIEAIRTER FYDYEKQGIQVVPSARAANFTMNRKAIRDLAARDLGLRTANYRYASSLEELRSAVGEVGLPCVVKPLMSSSGKGQSTVRS EAEIEAAWSYSQSGKRGDIAEVIVEAFVPFHTEITLLTVTQKNGPTLFCPPIGHRQERGDYQESWQPCRISPEQLEEAQN IAGKVTEALTGAGIWGVEFFLADDGVYFSELSPRPHDTGMVTLAGTQNLSEFELHARAVLGLPVPDITLLRAGASAVILA DRVGNNPSFDGLDAALAEPGSDIRIFGKPVMRPYRRMGVALMSGEKGSDVDELKRQAIANAEKVMIKCDETV
Sequences:
>Translated_392_residues MPKTIMLLGSGELGKEFVIAVKRLGQRVVAVDSYDDAPAQQVADRREVIDMLDGRALDAIVAKHRPDIIVPEIEAIRTER FYDYEKQGIQVVPSARAANFTMNRKAIRDLAARDLGLRTANYRYASSLEELRSAVGEVGLPCVVKPLMSSSGKGQSTVRS EAEIEAAWSYSQSGKRGDIAEVIVEAFVPFHTEITLLTVTQKNGPTLFCPPIGHRQERGDYQESWQPCRISPEQLEEAQN IAGKVTEALTGAGIWGVEFFLADDGVYFSELSPRPHDTGMVTLAGTQNLSEFELHARAVLGLPVPDITLLRAGASAVILA DRVGNNPSFDGLDAALAEPGSDIRIFGKPVMRPYRRMGVALMSGEKGSDVDELKRQAIANAEKVMIKCDETV >Mature_391_residues PKTIMLLGSGELGKEFVIAVKRLGQRVVAVDSYDDAPAQQVADRREVIDMLDGRALDAIVAKHRPDIIVPEIEAIRTERF YDYEKQGIQVVPSARAANFTMNRKAIRDLAARDLGLRTANYRYASSLEELRSAVGEVGLPCVVKPLMSSSGKGQSTVRSE AEIEAAWSYSQSGKRGDIAEVIVEAFVPFHTEITLLTVTQKNGPTLFCPPIGHRQERGDYQESWQPCRISPEQLEEAQNI AGKVTEALTGAGIWGVEFFLADDGVYFSELSPRPHDTGMVTLAGTQNLSEFELHARAVLGLPVPDITLLRAGASAVILAD RVGNNPSFDGLDAALAEPGSDIRIFGKPVMRPYRRMGVALMSGEKGSDVDELKRQAIANAEKVMIKCDETV
Specific function: Catalyzes two reactions:the first one is the production of beta-formyl glycinamide ribonucleotide (GAR) from formate, ATP and beta GAR; the second, a side reaction, is the production of acetyl phosphate and ADP from acetate and ATP
COG id: COG0027
COG function: function code F; Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain
Homologues:
Organism=Escherichia coli, GI1788155, Length=375, Percent_Identity=54.1333333333333, Blast_Score=375, Evalue=1e-105, Organism=Escherichia coli, GI1786733, Length=361, Percent_Identity=25.207756232687, Blast_Score=68, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6324702, Length=366, Percent_Identity=23.7704918032787, Blast_Score=109, Evalue=7e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PURT_CHLTE (Q8KDJ0)
Other databases:
- EMBL: AE006470 - RefSeq: NP_661951.1 - HSSP: P33221 - ProteinModelPortal: Q8KDJ0 - SMR: Q8KDJ0 - GeneID: 1006954 - GenomeReviews: AE006470_GR - KEGG: cte:CT1060 - NMPDR: fig|194439.1.peg.1045 - TIGR: CT1060 - HOGENOM: HBG516369 - OMA: TMNRKAI - ProtClustDB: PRK09288 - BioCyc: CTEP194439:CT_1060-MONOMER - HAMAP: MF_01643 - InterPro: IPR011761 - InterPro: IPR003135 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR005862 - InterPro: IPR011054 - Gene3D: G3DSA:3.30.1490.20 - Gene3D: G3DSA:3.30.470.20 - Gene3D: G3DSA:3.40.50.20 - PANTHER: PTHR23047:SF2 - TIGRFAMs: TIGR01142
Pfam domain/function: PF02222 ATP-grasp; SSF52440 PreATP-grasp-like; SSF51246 Rudmnt_hyb_motif
EC number: 2.1.2.- [C]
Molecular weight: Translated: 42783; Mature: 42652
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS50975 ATP_GRASP
Important sites: BINDING 72-72 BINDING 104-104 BINDING 145-145 BINDING 193-193 BINDING 258-258 BINDING 270-270 BINDING 277-277 BINDING 348-348
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKTIMLLGSGELGKEFVIAVKRLGQRVVAVDSYDDAPAQQVADRREVIDMLDGRALDAI CCCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHH VAKHRPDIIVPEIEAIRTERFYDYEKQGIQVVPSARAANFTMNRKAIRDLAARDLGLRTA HHHCCCCEECCCHHHHHHHHHHCHHHCCEEEECCCCCCCEEECHHHHHHHHHHHHCCCCC NYRYASSLEELRSAVGEVGLPCVVKPLMSSSGKGQSTVRSEAEIEAAWSYSQSGKRGDIA CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHH EVIVEAFVPFHTEITLLTVTQKNGPTLFCPPIGHRQERGDYQESWQPCRISPEQLEEAQN HHHHHHHCCCCCEEEEEEEEECCCCEEEECCCCCCHHCCCHHHCCCCCCCCHHHHHHHHH IAGKVTEALTGAGIWGVEFFLADDGVYFSELSPRPHDTGMVTLAGTQNLSEFELHARAVL HHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHEE GLPVPDITLLRAGASAVILADRVGNNPSFDGLDAALAEPGSDIRIFGKPVMRPYRRMGVA CCCCCCHHEEECCCCEEEEEECCCCCCCCCCCHHHHHCCCCCEEEECCHHHHHHHHHCEE LMSGEKGSDVDELKRQAIANAEKVMIKCDETV EECCCCCCCHHHHHHHHHCCCCEEEEEECCCC >Mature Secondary Structure PKTIMLLGSGELGKEFVIAVKRLGQRVVAVDSYDDAPAQQVADRREVIDMLDGRALDAI CCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHH VAKHRPDIIVPEIEAIRTERFYDYEKQGIQVVPSARAANFTMNRKAIRDLAARDLGLRTA HHHCCCCEECCCHHHHHHHHHHCHHHCCEEEECCCCCCCEEECHHHHHHHHHHHHCCCCC NYRYASSLEELRSAVGEVGLPCVVKPLMSSSGKGQSTVRSEAEIEAAWSYSQSGKRGDIA CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHH EVIVEAFVPFHTEITLLTVTQKNGPTLFCPPIGHRQERGDYQESWQPCRISPEQLEEAQN HHHHHHHCCCCCEEEEEEEEECCCCEEEECCCCCCHHCCCHHHCCCCCCCCHHHHHHHHH IAGKVTEALTGAGIWGVEFFLADDGVYFSELSPRPHDTGMVTLAGTQNLSEFELHARAVL HHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHEE GLPVPDITLLRAGASAVILADRVGNNPSFDGLDAALAEPGSDIRIFGKPVMRPYRRMGVA CCCCCCHHEEECCCCEEEEEECCCCCCCCCCCHHHHHCCCCCEEEECCHHHHHHHHHCEE LMSGEKGSDVDELKRQAIANAEKVMIKCDETV EECCCCCCCHHHHHHHHHCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Formate; 5'-Phospho-Ribosylglycinamide; acetate; ATP [C]
Specific reaction: Formate + ATP + 5'-Phospho-Ribosylglycinamide = 5'-Phosphoribosyl-N-Formylglycinamide + ADP + Pyrophosphate. acetate + ATP = acetylphosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12093901