| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is ybjT [C]
Identifier: 21673889
GI number: 21673889
Start: 999779
End: 1000813
Strand: Direct
Name: ybjT [C]
Synonym: CT1063
Alternate gene names: 21673889
Gene position: 999779-1000813 (Clockwise)
Preceding gene: 21673886
Following gene: 21673890
Centisome position: 46.39
GC content: 56.81
Gene sequence:
>1035_bases ATGTCATCTTCGTCTGTACTGGCTGAATCCTGTAACGGCTCTCAGAAAAAGCGCGTGTTCGTGGTGGGAGCGACCGGGTA TATCGGCAAGTTTGTTGTCCGCGAGCTGGTTTCAAGAGGCTATGAGGTCATCAGTTTCGCCCGTCCGCGATCCGGCGTGA ACGCATCGACTACCGAGGATGAGACCCGTCGGCAACTTCAGGGTTCCGAGGTGCGTTTCGGCGATGTGTCGAATTTGGAG TCGCTCTTGCGCGATGGCATCCGGGGCGAGCATTTCGATGCGGTGGTCTCGTGCCTGGCCTCGCGCAACGGAGGGATCAA AGATTCGTGGGACATCGATTACCAGGCGACGCGCAATTCGCTCGATGCCGGAATGAAGGCAGGAATCAACCATTTCGTGC TGCTTTCGGCGATCTGCGTGCAGAAGCCGATGCTGGAGTTTCAGCGTGCCAAGCTGAAGTTCGAAAAGGAGTTGCGCGAG TCTGGCGTGACCTACTCCATTGTCAGGCCAACGGCGTTTTTCAAGTCGATTGCCGGGCAGATCGAGAAGGTCAAAAACGG CAAGCCTTATGTTATGTTCGGGGATGGCAAACTCACGGCGTGCAAGCCGATCAGCGAAGGTGATCTGGCCCGCTTCATCA CCGACTGCCTCGAAGATCCGGAGAAACAGAACAAGATTCTGCCCATCGGTGGGCCGGGCGAGCCGGTGACCAACCTCGAT CAGGCGCTGATGCTCTTCGAGCTGCTTGGCCGGAAGCCGAAGCTCAAGAAGGTGCCGATCCAGATATTCGACGTGATTAT TCCGTTGCTGACGCTGATCTCGAAGTTCCTGCCGTCATTTGCAGAAAAAGCGGAGTTCGCTCGTATTGGCAAATACTACT GCTCGGAGTCGATGCTGGTGTGGGATCCGGTCAAAAAACGTTATGACGCCGACGCTACGCCCTCATACGGCACCGAAACC CTGCGCGACTTCTACAAACGCGTGCTCAAGGAGGGGCTCGCCGGTCAGGAACTCGGCGCGCACGCGATGTTCTGA
Upstream 100 bases:
>100_bases TTCAAATCCCCTCAAACAGTTTCAAAACAATGATTTTAGCCTTATACTTGTTCTGGACAGCGATTTCCGGTTTTCAATCA ACCTTTACTGGCTATTGGTT
Downstream 100 bases:
>100_bases GGCGGCATAAAGCCTCTTTGCCATGATGACTCGCTCCGCGCTTGACTTCCTCGTGGAACTCAAAGCCAACAACAACCGGG AGTGGTTCGAGGCGAACCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NAD-Dependent Epimerase/Dehydratase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; NmrA-Like Family; NAD Dependent Epimerase/Dehydratase Family Protein; NADH Dehydrogenase/Oxidoreductase-Like Protein; NADH Dehydrogenase; Nucleoside-Diphosphate-Sugar Epimerase; 3 8-Divinyl Protochlorophyllide A 8-Vinyl Reductase; Homolog NADH Dehydrogenase; Glucose/Sorbosone Dehydrogenase-Like Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; NmrA-Like; NAD Dependent Epimerase/Dehydratase
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MSSSSVLAESCNGSQKKRVFVVGATGYIGKFVVRELVSRGYEVISFARPRSGVNASTTEDETRRQLQGSEVRFGDVSNLE SLLRDGIRGEHFDAVVSCLASRNGGIKDSWDIDYQATRNSLDAGMKAGINHFVLLSAICVQKPMLEFQRAKLKFEKELRE SGVTYSIVRPTAFFKSIAGQIEKVKNGKPYVMFGDGKLTACKPISEGDLARFITDCLEDPEKQNKILPIGGPGEPVTNLD QALMLFELLGRKPKLKKVPIQIFDVIIPLLTLISKFLPSFAEKAEFARIGKYYCSESMLVWDPVKKRYDADATPSYGTET LRDFYKRVLKEGLAGQELGAHAMF
Sequences:
>Translated_344_residues MSSSSVLAESCNGSQKKRVFVVGATGYIGKFVVRELVSRGYEVISFARPRSGVNASTTEDETRRQLQGSEVRFGDVSNLE SLLRDGIRGEHFDAVVSCLASRNGGIKDSWDIDYQATRNSLDAGMKAGINHFVLLSAICVQKPMLEFQRAKLKFEKELRE SGVTYSIVRPTAFFKSIAGQIEKVKNGKPYVMFGDGKLTACKPISEGDLARFITDCLEDPEKQNKILPIGGPGEPVTNLD QALMLFELLGRKPKLKKVPIQIFDVIIPLLTLISKFLPSFAEKAEFARIGKYYCSESMLVWDPVKKRYDADATPSYGTET LRDFYKRVLKEGLAGQELGAHAMF >Mature_343_residues SSSSVLAESCNGSQKKRVFVVGATGYIGKFVVRELVSRGYEVISFARPRSGVNASTTEDETRRQLQGSEVRFGDVSNLES LLRDGIRGEHFDAVVSCLASRNGGIKDSWDIDYQATRNSLDAGMKAGINHFVLLSAICVQKPMLEFQRAKLKFEKELRES GVTYSIVRPTAFFKSIAGQIEKVKNGKPYVMFGDGKLTACKPISEGDLARFITDCLEDPEKQNKILPIGGPGEPVTNLDQ ALMLFELLGRKPKLKKVPIQIFDVIIPLLTLISKFLPSFAEKAEFARIGKYYCSESMLVWDPVKKRYDADATPSYGTETL RDFYKRVLKEGLAGQELGAHAMF
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38189; Mature: 38058
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSSVLAESCNGSQKKRVFVVGATGYIGKFVVRELVSRGYEVISFARPRSGVNASTTED CCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHH ETRRQLQGSEVRFGDVSNLESLLRDGIRGEHFDAVVSCLASRNGGIKDSWDIDYQATRNS HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LDAGMKAGINHFVLLSAICVQKPMLEFQRAKLKFEKELRESGVTYSIVRPTAFFKSIAGQ HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH IEKVKNGKPYVMFGDGKLTACKPISEGDLARFITDCLEDPEKQNKILPIGGPGEPVTNLD HHHHCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCHHHHH QALMLFELLGRKPKLKKVPIQIFDVIIPLLTLISKFLPSFAEKAEFARIGKYYCSESMLV HHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE WDPVKKRYDADATPSYGTETLRDFYKRVLKEGLAGQELGAHAMF ECHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SSSSVLAESCNGSQKKRVFVVGATGYIGKFVVRELVSRGYEVISFARPRSGVNASTTED CCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHH ETRRQLQGSEVRFGDVSNLESLLRDGIRGEHFDAVVSCLASRNGGIKDSWDIDYQATRNS HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LDAGMKAGINHFVLLSAICVQKPMLEFQRAKLKFEKELRESGVTYSIVRPTAFFKSIAGQ HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH IEKVKNGKPYVMFGDGKLTACKPISEGDLARFITDCLEDPEKQNKILPIGGPGEPVTNLD HHHHCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCHHHHH QALMLFELLGRKPKLKKVPIQIFDVIIPLLTLISKFLPSFAEKAEFARIGKYYCSESMLV HHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE WDPVKKRYDADATPSYGTETLRDFYKRVLKEGLAGQELGAHAMF ECHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA