Click here to switch to the map view.

The map label for this gene is ndhJ [H]

Identifier: 21673598

GI number: 21673598

Start: 740411

End: 740932

Strand: Direct

Name: ndhJ [H]

Synonym: CT0768

Alternate gene names: 21673598

Gene position: 740411-740932 (Clockwise)

Preceding gene: 21673597

Following gene: 21673599

Centisome position: 34.36

GC content: 54.21

Gene sequence:

>522_bases
ATGGAAGAAGCAGCAAACCAGATGTCGCCAGCGGTGCAGCAGAGCAAAGCCGCTTATGATAATATAAAGGAGCGATTTGG
CGATGCGATATCGGAGTTCGACGCCAATCCGACCATGCCGTTCTTCGAGGTGCTTGATGTCAGCAAGTGGGTGGACATTG
CGCTTTACATGCGTGACAACTCTCTTCTGCAGTTCAACTACCTTGCCTGCCTGTCGGGCGTGGACTATCCCGAAGAGCAG
AAGCTTGGCATCGTCTGCAATTTGGAGTGCATCGGCAAATACACCCACAAGATTGCTGTCAAGGTCAAGTGTCCGCGTGA
TGGCGGCTCGATTCCGTCCGTCTCGTGCGTATGGCACACCGCGAACTGGCACGAACGCGAAGCCTACGATATGTACGGCA
TGGTTTTCGAAGGGCACCCCGACCTGCGAAGGATCCTCTGTCCGGAAGACTGGACCGGTTTTCCGCTTCGCAAGGATTAC
CAGGTTCAGGAGACCTATCACGGCATCAAGGTTCCGTATTGA

Upstream 100 bases:

>100_bases
AGAAGCTTGCAGGAAAGCGTGTTGATCCGCAGCAGGTGATCGACCAGGTTCGCAAGTCGGCTACGGCATAACCACTATTA
TCTATCAAGAATTCAAGGGA

Downstream 100 bases:

>100_bases
CGCCATAACCCGTAAACAAGCATTTTCCGAGTCATGCAGGAATTAGGCAAAGCTGAAACGAACTCCACCAGGATCATCCG
TCAGGACGACAAGCGCGTCA

Product: NADH dehydrogenase I, 30 kDa subunit

Products: NA

Alternate protein names: NADH dehydrogenase I subunit C; NDH-1 subunit C [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MEEAANQMSPAVQQSKAAYDNIKERFGDAISEFDANPTMPFFEVLDVSKWVDIALYMRDNSLLQFNYLACLSGVDYPEEQ
KLGIVCNLECIGKYTHKIAVKVKCPRDGGSIPSVSCVWHTANWHEREAYDMYGMVFEGHPDLRRILCPEDWTGFPLRKDY
QVQETYHGIKVPY

Sequences:

>Translated_173_residues
MEEAANQMSPAVQQSKAAYDNIKERFGDAISEFDANPTMPFFEVLDVSKWVDIALYMRDNSLLQFNYLACLSGVDYPEEQ
KLGIVCNLECIGKYTHKIAVKVKCPRDGGSIPSVSCVWHTANWHEREAYDMYGMVFEGHPDLRRILCPEDWTGFPLRKDY
QVQETYHGIKVPY
>Mature_173_residues
MEEAANQMSPAVQQSKAAYDNIKERFGDAISEFDANPTMPFFEVLDVSKWVDIALYMRDNSLLQFNYLACLSGVDYPEEQ
KLGIVCNLECIGKYTHKIAVKVKCPRDGGSIPSVSCVWHTANWHEREAYDMYGMVFEGHPDLRRILCPEDWTGFPLRKDY
QVQETYHGIKVPY

Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translo

COG id: COG0852

COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 30 kDa subunit family [H]

Homologues:

Organism=Homo sapiens, GI4758788, Length=111, Percent_Identity=38.7387387387387, Blast_Score=80, Evalue=9e-16,
Organism=Escherichia coli, GI145693162, Length=68, Percent_Identity=44.1176470588235, Blast_Score=77, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI32563621, Length=111, Percent_Identity=35.1351351351351, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71990788, Length=111, Percent_Identity=35.1351351351351, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24656494, Length=111, Percent_Identity=36.9369369369369, Blast_Score=73, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010218
- InterPro:   IPR001268
- InterPro:   IPR020396
- ProDom:   PD001581 [H]

Pfam domain/function: PF00329 Complex1_30kDa [H]

EC number: =1.6.99.5 [H]

Molecular weight: Translated: 19883; Mature: 19883

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00542 COMPLEX1_30K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEAANQMSPAVQQSKAAYDNIKERFGDAISEFDANPTMPFFEVLDVSKWVDIALYMRDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEEECC
SLLQFNYLACLSGVDYPEEQKLGIVCNLECIGKYTHKIAVKVKCPRDGGSIPSVSCVWHT
CEEEEHHHHHHCCCCCCCCCCEEEEEEHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEEC
ANWHEREAYDMYGMVFEGHPDLRRILCPEDWTGFPLRKDYQVQETYHGIKVPY
CCCCCCHHHHHEEEEECCCCCHHEEECCCCCCCCCCCCCCCHHHHHCCEECCC
>Mature Secondary Structure
MEEAANQMSPAVQQSKAAYDNIKERFGDAISEFDANPTMPFFEVLDVSKWVDIALYMRDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEEECC
SLLQFNYLACLSGVDYPEEQKLGIVCNLECIGKYTHKIAVKVKCPRDGGSIPSVSCVWHT
CEEEEHHHHHHCCCCCCCCCCEEEEEEHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEEC
ANWHEREAYDMYGMVFEGHPDLRRILCPEDWTGFPLRKDYQVQETYHGIKVPY
CCCCCCHHHHHEEEEECCCCCHHEEECCCCCCCCCCCCCCCHHHHHCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA