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The map label for this gene is rarA [H]

Identifier: 21673587

GI number: 21673587

Start: 731576

End: 732931

Strand: Direct

Name: rarA [H]

Synonym: CT0757

Alternate gene names: 21673587

Gene position: 731576-732931 (Clockwise)

Preceding gene: 21673586

Following gene: 21673588

Centisome position: 33.95

GC content: 63.94

Gene sequence:

>1356_bases
ATGCCGGACGAACACTCGCAATCCGATCTTTTCGGTTTCTCCGATCCGGGCCGCTCGTCCGCGAAAAGCAACCGCTTTCA
GCCGCTTGCCGAACGGGTGCGCCCGCGCTCGATCGACGAGCTGTTTGGTCAGGAGCACCTCGTCGGCCCCGGCGGGCCGG
TCAGGAGTTACCTCGAACAGGGTCGCATTCCCTCGATGATCTTCTGGGGGCCGCCCGGCTCTGGCAAGACCACACTCGCC
GAAATCTGCGCCAGATCGCTGAACTACCGCTTCGAGCAGCTCTCGGCAACCGACGCAGGCGTCAAGGATGTGCGCCGCGT
GCTCGAACTGGCGCAGAAAAGCCGCTCCATCGACGGGCGGCAGATGCTGCTTTTCATCGACGAAATCCACCGCTTCAACA
AGGCGCAGCAGGACACGCTGCTGCACGCCATCGAGCAGGGGCTCATCGTGCTGATCGGCGCGACCACCGAGAACCCGTCC
TTCGAGGTGAATCGCGCGCTGCTCAGCCGGATGCAGGTTTACATTCTCAACCCGCTGAGCGAAGCCGAGGTGCGGCGCGT
CGTCGAGCGGGCCATCGAGAGCGATCCGCAGCTCGCCGCCGCCGGAGTCGAAATGCGTGACATGGAGTTCCTGCTCGCCT
ATGCGGCGGGCGACGCACGCAAGGCGCTCAACGCGCTCGAAGCCGCCCTGTCGCTCGCGCCACGCGGAACCGCGCCGGTG
GTGATCGACCGCACGCGGCTCGAACAGGCGCTCCAGCACCGCGCTCCGACCTACGACAAAGGCGGCGAGGCGCACTACGA
CACGGTGTCTGCCTTCATCAAATCGATGCGCGGCTCTGACCCCGACGCAGCGCTTTTCTGGATGGCCAAAATGATTGACG
GCGGCGAAGACCCGAAGTTCATCGCCCGCCGCATGGTGATTTTCGCCAGCGAGGACATTGGCAACGCCGACCCCTACGCG
CTCACGCTCGCCGTCTCGGTGTTTCACGCCGTCGAGCTGATCGGCCTACCCGAAGCGCGCATCAACCTCGCCCAGGGCGC
GACCTACCTGGCCTCGTGCCCAAAATCGAACGCGAGCTACGAGGGTATCAACGAGGCGTTGTCGGATGTCAAAAAGGGCG
CCGCCAATGCCGTGCCGCCCCTCTACCTGCGCAACGCCCCGACTGACCTGATGAAAGAGATTGGCTACGGCAAAGGCTAC
CGCTACCCCCACAGCTACCCTGGCCACTTCGTCGAAGAGCACTACTTCCCCGAGCAGATGGAGCCAAAAGCTTACTACCG
CCCAACCGGCGAGGGCCGCGAAAAGTTCATCCGTGAACGGCTGGAGGGGTTGTGGAAGGATCGATATGGGGATTGA

Upstream 100 bases:

>100_bases
TCGGCAAGTACGTCGCCCGGCAGCATACGGCGGCCGCCGCGCCGTCGCAGGAGCCGAGCCGCATTACCGAATCGTGGTTG
AGCGGCCAGGGGTTTGCATG

Downstream 100 bases:

>100_bases
TTGGATCGCGCTGGAGGTGGTGGTATATTTGGAGCACCTTACAACAAACAGAATGCCGTCATGAACCTGCACAGAATAAT
CGCGCTTCTCGTTCTCTTTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MPDEHSQSDLFGFSDPGRSSAKSNRFQPLAERVRPRSIDELFGQEHLVGPGGPVRSYLEQGRIPSMIFWGPPGSGKTTLA
EICARSLNYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPS
FEVNRALLSRMQVYILNPLSEAEVRRVVERAIESDPQLAAAGVEMRDMEFLLAYAAGDARKALNALEAALSLAPRGTAPV
VIDRTRLEQALQHRAPTYDKGGEAHYDTVSAFIKSMRGSDPDAALFWMAKMIDGGEDPKFIARRMVIFASEDIGNADPYA
LTLAVSVFHAVELIGLPEARINLAQGATYLASCPKSNASYEGINEALSDVKKGAANAVPPLYLRNAPTDLMKEIGYGKGY
RYPHSYPGHFVEEHYFPEQMEPKAYYRPTGEGREKFIRERLEGLWKDRYGD

Sequences:

>Translated_451_residues
MPDEHSQSDLFGFSDPGRSSAKSNRFQPLAERVRPRSIDELFGQEHLVGPGGPVRSYLEQGRIPSMIFWGPPGSGKTTLA
EICARSLNYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPS
FEVNRALLSRMQVYILNPLSEAEVRRVVERAIESDPQLAAAGVEMRDMEFLLAYAAGDARKALNALEAALSLAPRGTAPV
VIDRTRLEQALQHRAPTYDKGGEAHYDTVSAFIKSMRGSDPDAALFWMAKMIDGGEDPKFIARRMVIFASEDIGNADPYA
LTLAVSVFHAVELIGLPEARINLAQGATYLASCPKSNASYEGINEALSDVKKGAANAVPPLYLRNAPTDLMKEIGYGKGY
RYPHSYPGHFVEEHYFPEQMEPKAYYRPTGEGREKFIRERLEGLWKDRYGD
>Mature_450_residues
PDEHSQSDLFGFSDPGRSSAKSNRFQPLAERVRPRSIDELFGQEHLVGPGGPVRSYLEQGRIPSMIFWGPPGSGKTTLAE
ICARSLNYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPSF
EVNRALLSRMQVYILNPLSEAEVRRVVERAIESDPQLAAAGVEMRDMEFLLAYAAGDARKALNALEAALSLAPRGTAPVV
IDRTRLEQALQHRAPTYDKGGEAHYDTVSAFIKSMRGSDPDAALFWMAKMIDGGEDPKFIARRMVIFASEDIGNADPYAL
TLAVSVFHAVELIGLPEARINLAQGATYLASCPKSNASYEGINEALSDVKKGAANAVPPLYLRNAPTDLMKEIGYGKGYR
YPHSYPGHFVEEHYFPEQMEPKAYYRPTGEGREKFIRERLEGLWKDRYGD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=43.6073059360731, Blast_Score=335, Evalue=4e-92,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=39.7260273972603, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI4506491, Length=241, Percent_Identity=27.3858921161826, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI31881687, Length=241, Percent_Identity=27.3858921161826, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI31563534, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787119, Length=427, Percent_Identity=44.2622950819672, Blast_Score=347, Evalue=9e-97,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=38.9671361502347, Blast_Score=299, Evalue=7e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=223, Percent_Identity=26.0089686098655, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI19921076, Length=211, Percent_Identity=26.5402843601896, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50150; Mature: 50019

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDEHSQSDLFGFSDPGRSSAKSNRFQPLAERVRPRSIDELFGQEHLVGPGGPVRSYLEQ
CCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHC
GRIPSMIFWGPPGSGKTTLAEICARSLNYRFEQLSATDAGVKDVRRVLELAQKSRSIDGR
CCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCH
QMLLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPSFEVNRALLSRMQVYILNPLS
HHHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
EAEVRRVVERAIESDPQLAAAGVEMRDMEFLLAYAAGDARKALNALEAALSLAPRGTAPV
HHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCE
VIDRTRLEQALQHRAPTYDKGGEAHYDTVSAFIKSMRGSDPDAALFWMAKMIDGGEDPKF
EEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
IARRMVIFASEDIGNADPYALTLAVSVFHAVELIGLPEARINLAQGATYLASCPKSNASY
HHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCCCCCH
EGINEALSDVKKGAANAVPPLYLRNAPTDLMKEIGYGKGYRYPHSYPGHFVEEHYFPEQM
HHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCC
EPKAYYRPTGEGREKFIRERLEGLWKDRYGD
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PDEHSQSDLFGFSDPGRSSAKSNRFQPLAERVRPRSIDELFGQEHLVGPGGPVRSYLEQ
CCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHC
GRIPSMIFWGPPGSGKTTLAEICARSLNYRFEQLSATDAGVKDVRRVLELAQKSRSIDGR
CCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCH
QMLLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPSFEVNRALLSRMQVYILNPLS
HHHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
EAEVRRVVERAIESDPQLAAAGVEMRDMEFLLAYAAGDARKALNALEAALSLAPRGTAPV
HHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCE
VIDRTRLEQALQHRAPTYDKGGEAHYDTVSAFIKSMRGSDPDAALFWMAKMIDGGEDPKF
EEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
IARRMVIFASEDIGNADPYALTLAVSVFHAVELIGLPEARINLAQGATYLASCPKSNASY
HHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCCCCCH
EGINEALSDVKKGAANAVPPLYLRNAPTDLMKEIGYGKGYRYPHSYPGHFVEEHYFPEQM
HHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCC
EPKAYYRPTGEGREKFIRERLEGLWKDRYGD
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]