Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

Click here to switch to the map view.

The map label for this gene is pbpG [H]

Identifier: 213692923

GI number: 213692923

Start: 2280852

End: 2283140

Strand: Reverse

Name: pbpG [H]

Synonym: Blon_2067

Alternate gene names: 213692923

Gene position: 2283140-2280852 (Counterclockwise)

Preceding gene: 213692924

Following gene: 213692922

Centisome position: 80.6

GC content: 59.98

Gene sequence:

>2289_bases
ATGGGGCCCATGCCCAAAAAGAAGTCCCTCACTCTCCAACGTGTGCTTGTTCTCCTCTTGGCCTATATCATGCTTGCCGT
CTGCGGCGGCGTGGCGGCCAGTGTGTTGTTTGTACCGGGTGTGGTCGGTGCCAATAAAGCCGCCAAAGCGGTGATTCCGT
CGCTCAAGGTAGAAAATGTGGACTTCGATGTGACCAGTCTGCCTCAGAAGTCGACGATGTACGCGCGAGACGGTTCCACC
GTTATCGCGACGTTCTACAACCAAAACCGTATCGTCGTGCCGCTGAAGAAGATTTCCAAAACCATGCAGCAGGCAGTGGT
GGCGCGCGAAGACCGTCGATTCTGGACTCACGCCGGCGTCGACGTGCAAGGCGTGATGCGTGCGTTTGTGCAGACCTACC
TCGTCAAAGGCTCCCAGCAGGGTGGTTCGTCGCTGACCCAGCAGTACGTCAAGAACGTGCTGCTCATGCAGGCGATCGAG
GACGACGACCCGATCGCCCAGTACCATGCCACCGAAGACACCGTCGCCCGCAAGATCCGCGAGATGCTGATCTCCGTGCA
GATGGAGAAGAAGTATTCCAAGGCCGAGATCCTGCAGGGCTATCTGAACATCGCCCAGTTCGGCAACAACCTGTACGGCG
TGGAGACCGCGGCCCAGCGCTACTTCAGCGTGTCCGCCGCCGACCTGAACGTGGTGCAGTCCGCCACCATCGCGGCCATC
ACCAAGAACCCGAGCCAGTACGATCCGCTGGTCGAGGAGAACCAGAAGGAAAGCGAAAACCAGCGCAACATCGTGCTCAA
GCTGATGCTGCAGGAAGGGTACATCACCCAGGACCAGTACACCGAGGCCGTGAACACGCCGCTGAAGGACACGCTGAAGG
TGCAGTCCGTGAACGTCGGCTGCCAGGACACCGGCGACTATGCGTACTTCTGCGACTTCGTGGTGCGCCGCATCCAGAAC
TCCGAGGAATTCGGCAAGACCCGCGCCGAACGCAACAAACTGCTGCAGGAGGGCGGCCTGAAGATCGTCACCACATTGGA
TGTGGAGGCGAACTCCATGATGATGGACACCGCGCGCCGCACCATTCCGCCCGATGATCCCAGCGGCATGGAGATCGCCA
TGGCCGCGGTCAAACCGGGGACCGGCGAGGTGCTGGGCTTCGGCCTGAACCGCCACTATGACGCCACCCCGGCGGCCGCG
AACGACCCGACCAAGACGAGCCAGAACTACGCCGTCGATCTGGTGGACGGCGGCGGCTCCGGTTGGACCATCGGCTCGTC
CTGGAAGCCCATCAACCTCATCGCATGGATGGAGGCGGGCCATTCGATCAACGACAACCTGCAGACCACCACGACGTACC
CCACGACCGACTTCGCCTGCGACAACTACAAGGGCGGCGCCGATTCGTGGAACGTGTCGAACGCCATGGGCGCCGGCACG
GTGAACCCGGAAAGCCCGTTCCTCGGTCTGGTGCGATCGCACAACACCACCCAGGCCTCCATGGGCGCCATCCTCAAACT
GTGCAAGGTGGCGGACACCGCGACCGAACTGGGATACCATGACGCCGCCACCGGCGAGACCATCGACAAGACCCCGGTGT
ACACGCCGTCCATGATGATCGGCTCGGTGAACGTGTCCCCGCTGACCATGGCGAGCATCTTCGCCGTATACGCCTCGAAC
GGCGTGCAGTGCAACCCGATCGCCATCAACAAGGTGACCGGCAGGGACGGCAAGGAGTTCAAGGTCCCGTCCGCGAACTG
CCATCAGGCGGTGGATAAGGACATCATCCAAACACTCGCTTATACCCTGAACCAAGGTACGGTGCGGCCGGATGGTGCCG
GTTGGTCATTCAGATTGGCTGACGGGCGTAAGTCGTTTGGTAAGACCGGTACCAGTGAGGATCTCGCGGTGTCCGGTGGA
TCGTTCATTCCTAATCAGATCGCGGCGTTCGCTGTGGTCGGCGACGCACAGAACCCGTACACCAACCGTATTTCCAACAT
TGCCATCAACGGCCGGTACAACAGCTATTGGGATGGTTCGACAATCGCAGCTCCGGCCGTTACCAACTTCTTCAATAGCT
ACATTTCCAAGAAGAAAATACCGATTGACAACGATTACGGCCAGCCCGTCTCGAAGTACACCACGACTGGCAAGTATCTG
GGCATTGGCGGACGAACGTTCAGCGCGCCGCAGACCACTACGAATGGCAACAGCCAATCGCAGAGCAACAACAATCAGTC
TCAGTCGCAGAACACTGGGCAAAACAACACCCAAACCCAGGGGCACTGA

Upstream 100 bases:

>100_bases
TTCGGCTGACTTCCAGCCGATGTTACGCTAGTGCGGTTCTTGTGATGATATGTTCACGGGAGCTGACCGTAAGCCCGGTT
GGTAGGGCACCCCATTTAGA

Downstream 100 bases:

>100_bases
TTCAGAGCAGTTGTGAATGATGGCCAGTGATTGGTGATTGGCGTTTGACATTTGGTGATTGCAGGCCGGCTGAGTCTACG
TAACATGGCCGACTGCGATA

Product: glycosyl transferase, family 51

Products: NA

Alternate protein names: PBP-2D; PBP2d [H]

Number of amino acids: Translated: 762; Mature: 761

Protein sequence:

>762_residues
MGPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENVDFDVTSLPQKSTMYARDGST
VIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGVDVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIE
DDDPIAQYHATEDTVARKIREMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI
TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVGCQDTGDYAYFCDFVVRRIQN
SEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARRTIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAA
NDPTKTSQNYAVDLVDGGGSGWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT
VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMIGSVNVSPLTMASIFAVYASN
GVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLAYTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGG
SFIPNQIAAFAVVGDAQNPYTNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL
GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH

Sequences:

>Translated_762_residues
MGPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENVDFDVTSLPQKSTMYARDGST
VIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGVDVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIE
DDDPIAQYHATEDTVARKIREMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI
TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVGCQDTGDYAYFCDFVVRRIQN
SEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARRTIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAA
NDPTKTSQNYAVDLVDGGGSGWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT
VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMIGSVNVSPLTMASIFAVYASN
GVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLAYTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGG
SFIPNQIAAFAVVGDAQNPYTNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL
GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH
>Mature_761_residues
GPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENVDFDVTSLPQKSTMYARDGSTV
IATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGVDVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIED
DDPIAQYHATEDTVARKIREMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAIT
KNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVGCQDTGDYAYFCDFVVRRIQNS
EEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARRTIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAAN
DPTKTSQNYAVDLVDGGGSGWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGTV
NPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMIGSVNVSPLTMASIFAVYASNG
VQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLAYTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGGS
FIPNQIAAFAVVGDAQNPYTNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYLG
IGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH

Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]

COG id: COG0744

COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transpeptidase family [H]

Homologues:

Organism=Escherichia coli, GI87082258, Length=269, Percent_Identity=33.457249070632, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786343, Length=574, Percent_Identity=24.9128919860627, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1788867, Length=217, Percent_Identity=31.3364055299539, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789601, Length=217, Percent_Identity=30.8755760368664, Blast_Score=94, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001264
- InterPro:   IPR011816
- InterPro:   IPR001460 [H]

Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]

EC number: 2.4.2.-; 3.4.-.- [C]

Molecular weight: Translated: 82490; Mature: 82358

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECC
DFDVTSLPQKSTMYARDGSTVIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGV
CCCHHCCCCCCEEEECCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCHHHCCCC
DVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIEDDDPIAQYHATEDTVARKIR
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHH
EMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCEEEEE
TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVG
ECCCCCCCCHHHCCCHHCHHHHCEEEEEEECCCCCCHHHHHHHHCCCHHHCEEEEEEECC
CQDTGDYAYFCDFVVRRIQNSEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARR
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHC
TIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAANDPTKTSQNYAVDLVDGGGS
CCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
GWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT
CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMI
CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
GSVNVSPLTMASIFAVYASNGVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLA
ECCCCCHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHH
YTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGGSFIPNQIAAFAVVGDAQNPY
HHHCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEECCCCCCCHHHEEEEEEECCCCCH
TNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL
HHCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEE
GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH
ECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECC
DFDVTSLPQKSTMYARDGSTVIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGV
CCCHHCCCCCCEEEECCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCHHHCCCC
DVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIEDDDPIAQYHATEDTVARKIR
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHH
EMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCEEEEE
TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVG
ECCCCCCCCHHHCCCHHCHHHHCEEEEEEECCCCCCHHHHHHHHCCCHHHCEEEEEEECC
CQDTGDYAYFCDFVVRRIQNSEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARR
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHC
TIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAANDPTKTSQNYAVDLVDGGGS
CCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
GWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT
CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMI
CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
GSVNVSPLTMASIFAVYASNGVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLA
ECCCCCHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHH
YTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGGSFIPNQIAAFAVVGDAQNPY
HHHCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEECCCCCCCHHHEEEEEEECCCCCH
TNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL
HHCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEE
GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH
ECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]