| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is pbpG [H]
Identifier: 213692923
GI number: 213692923
Start: 2280852
End: 2283140
Strand: Reverse
Name: pbpG [H]
Synonym: Blon_2067
Alternate gene names: 213692923
Gene position: 2283140-2280852 (Counterclockwise)
Preceding gene: 213692924
Following gene: 213692922
Centisome position: 80.6
GC content: 59.98
Gene sequence:
>2289_bases ATGGGGCCCATGCCCAAAAAGAAGTCCCTCACTCTCCAACGTGTGCTTGTTCTCCTCTTGGCCTATATCATGCTTGCCGT CTGCGGCGGCGTGGCGGCCAGTGTGTTGTTTGTACCGGGTGTGGTCGGTGCCAATAAAGCCGCCAAAGCGGTGATTCCGT CGCTCAAGGTAGAAAATGTGGACTTCGATGTGACCAGTCTGCCTCAGAAGTCGACGATGTACGCGCGAGACGGTTCCACC GTTATCGCGACGTTCTACAACCAAAACCGTATCGTCGTGCCGCTGAAGAAGATTTCCAAAACCATGCAGCAGGCAGTGGT GGCGCGCGAAGACCGTCGATTCTGGACTCACGCCGGCGTCGACGTGCAAGGCGTGATGCGTGCGTTTGTGCAGACCTACC TCGTCAAAGGCTCCCAGCAGGGTGGTTCGTCGCTGACCCAGCAGTACGTCAAGAACGTGCTGCTCATGCAGGCGATCGAG GACGACGACCCGATCGCCCAGTACCATGCCACCGAAGACACCGTCGCCCGCAAGATCCGCGAGATGCTGATCTCCGTGCA GATGGAGAAGAAGTATTCCAAGGCCGAGATCCTGCAGGGCTATCTGAACATCGCCCAGTTCGGCAACAACCTGTACGGCG TGGAGACCGCGGCCCAGCGCTACTTCAGCGTGTCCGCCGCCGACCTGAACGTGGTGCAGTCCGCCACCATCGCGGCCATC ACCAAGAACCCGAGCCAGTACGATCCGCTGGTCGAGGAGAACCAGAAGGAAAGCGAAAACCAGCGCAACATCGTGCTCAA GCTGATGCTGCAGGAAGGGTACATCACCCAGGACCAGTACACCGAGGCCGTGAACACGCCGCTGAAGGACACGCTGAAGG TGCAGTCCGTGAACGTCGGCTGCCAGGACACCGGCGACTATGCGTACTTCTGCGACTTCGTGGTGCGCCGCATCCAGAAC TCCGAGGAATTCGGCAAGACCCGCGCCGAACGCAACAAACTGCTGCAGGAGGGCGGCCTGAAGATCGTCACCACATTGGA TGTGGAGGCGAACTCCATGATGATGGACACCGCGCGCCGCACCATTCCGCCCGATGATCCCAGCGGCATGGAGATCGCCA TGGCCGCGGTCAAACCGGGGACCGGCGAGGTGCTGGGCTTCGGCCTGAACCGCCACTATGACGCCACCCCGGCGGCCGCG AACGACCCGACCAAGACGAGCCAGAACTACGCCGTCGATCTGGTGGACGGCGGCGGCTCCGGTTGGACCATCGGCTCGTC CTGGAAGCCCATCAACCTCATCGCATGGATGGAGGCGGGCCATTCGATCAACGACAACCTGCAGACCACCACGACGTACC CCACGACCGACTTCGCCTGCGACAACTACAAGGGCGGCGCCGATTCGTGGAACGTGTCGAACGCCATGGGCGCCGGCACG GTGAACCCGGAAAGCCCGTTCCTCGGTCTGGTGCGATCGCACAACACCACCCAGGCCTCCATGGGCGCCATCCTCAAACT GTGCAAGGTGGCGGACACCGCGACCGAACTGGGATACCATGACGCCGCCACCGGCGAGACCATCGACAAGACCCCGGTGT ACACGCCGTCCATGATGATCGGCTCGGTGAACGTGTCCCCGCTGACCATGGCGAGCATCTTCGCCGTATACGCCTCGAAC GGCGTGCAGTGCAACCCGATCGCCATCAACAAGGTGACCGGCAGGGACGGCAAGGAGTTCAAGGTCCCGTCCGCGAACTG CCATCAGGCGGTGGATAAGGACATCATCCAAACACTCGCTTATACCCTGAACCAAGGTACGGTGCGGCCGGATGGTGCCG GTTGGTCATTCAGATTGGCTGACGGGCGTAAGTCGTTTGGTAAGACCGGTACCAGTGAGGATCTCGCGGTGTCCGGTGGA TCGTTCATTCCTAATCAGATCGCGGCGTTCGCTGTGGTCGGCGACGCACAGAACCCGTACACCAACCGTATTTCCAACAT TGCCATCAACGGCCGGTACAACAGCTATTGGGATGGTTCGACAATCGCAGCTCCGGCCGTTACCAACTTCTTCAATAGCT ACATTTCCAAGAAGAAAATACCGATTGACAACGATTACGGCCAGCCCGTCTCGAAGTACACCACGACTGGCAAGTATCTG GGCATTGGCGGACGAACGTTCAGCGCGCCGCAGACCACTACGAATGGCAACAGCCAATCGCAGAGCAACAACAATCAGTC TCAGTCGCAGAACACTGGGCAAAACAACACCCAAACCCAGGGGCACTGA
Upstream 100 bases:
>100_bases TTCGGCTGACTTCCAGCCGATGTTACGCTAGTGCGGTTCTTGTGATGATATGTTCACGGGAGCTGACCGTAAGCCCGGTT GGTAGGGCACCCCATTTAGA
Downstream 100 bases:
>100_bases TTCAGAGCAGTTGTGAATGATGGCCAGTGATTGGTGATTGGCGTTTGACATTTGGTGATTGCAGGCCGGCTGAGTCTACG TAACATGGCCGACTGCGATA
Product: glycosyl transferase, family 51
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 762; Mature: 761
Protein sequence:
>762_residues MGPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENVDFDVTSLPQKSTMYARDGST VIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGVDVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIE DDDPIAQYHATEDTVARKIREMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVGCQDTGDYAYFCDFVVRRIQN SEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARRTIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAA NDPTKTSQNYAVDLVDGGGSGWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMIGSVNVSPLTMASIFAVYASN GVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLAYTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGG SFIPNQIAAFAVVGDAQNPYTNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH
Sequences:
>Translated_762_residues MGPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENVDFDVTSLPQKSTMYARDGST VIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGVDVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIE DDDPIAQYHATEDTVARKIREMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVGCQDTGDYAYFCDFVVRRIQN SEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARRTIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAA NDPTKTSQNYAVDLVDGGGSGWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMIGSVNVSPLTMASIFAVYASN GVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLAYTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGG SFIPNQIAAFAVVGDAQNPYTNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH >Mature_761_residues GPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENVDFDVTSLPQKSTMYARDGSTV IATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGVDVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIED DDPIAQYHATEDTVARKIREMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAIT KNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVGCQDTGDYAYFCDFVVRRIQNS EEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARRTIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAAN DPTKTSQNYAVDLVDGGGSGWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGTV NPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMIGSVNVSPLTMASIFAVYASNG VQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLAYTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGGS FIPNQIAAFAVVGDAQNPYTNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYLG IGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=269, Percent_Identity=33.457249070632, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1786343, Length=574, Percent_Identity=24.9128919860627, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1788867, Length=217, Percent_Identity=31.3364055299539, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1789601, Length=217, Percent_Identity=30.8755760368664, Blast_Score=94, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 82490; Mature: 82358
Theoretical pI: Translated: 7.48; Mature: 7.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECC DFDVTSLPQKSTMYARDGSTVIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGV CCCHHCCCCCCEEEECCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCHHHCCCC DVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIEDDDPIAQYHATEDTVARKIR CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHH EMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCEEEEE TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVG ECCCCCCCCHHHCCCHHCHHHHCEEEEEEECCCCCCHHHHHHHHCCCHHHCEEEEEEECC CQDTGDYAYFCDFVVRRIQNSEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARR CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHC TIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAANDPTKTSQNYAVDLVDGGGS CCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC GWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMI CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE GSVNVSPLTMASIFAVYASNGVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLA ECCCCCHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHH YTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGGSFIPNQIAAFAVVGDAQNPY HHHCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEECCCCCCCHHHEEEEEEECCCCCH TNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL HHCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEE GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH ECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC >Mature Secondary Structure GPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVVGANKAAKAVIPSLKVENV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECC DFDVTSLPQKSTMYARDGSTVIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGV CCCHHCCCCCCEEEECCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCHHHCCCC DVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIEDDDPIAQYHATEDTVARKIR CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHH EMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCEEEEE TKNPSQYDPLVEENQKESENQRNIVLKLMLQEGYITQDQYTEAVNTPLKDTLKVQSVNVG ECCCCCCCCHHHCCCHHCHHHHCEEEEEEECCCCCCHHHHHHHHCCCHHHCEEEEEEECC CQDTGDYAYFCDFVVRRIQNSEEFGKTRAERNKLLQEGGLKIVTTLDVEANSMMMDTARR CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHC TIPPDDPSGMEIAMAAVKPGTGEVLGFGLNRHYDATPAAANDPTKTSQNYAVDLVDGGGS CCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC GWTIGSSWKPINLIAWMEAGHSINDNLQTTTTYPTTDFACDNYKGGADSWNVSNAMGAGT CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTPVYTPSMMI CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE GSVNVSPLTMASIFAVYASNGVQCNPIAINKVTGRDGKEFKVPSANCHQAVDKDIIQTLA ECCCCCHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHH YTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGGSFIPNQIAAFAVVGDAQNPY HHHCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCEEECCCCCCCHHHEEEEEEECCCCCH TNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL HHCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEE GIGGRTFSAPQTTTNGNSQSQSNNNQSQSQNTGQNNTQTQGH ECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]