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The map label for this gene is dapB

Identifier: 213692894

GI number: 213692894

Start: 2227699

End: 2228454

Strand: Reverse

Name: dapB

Synonym: Blon_2035

Alternate gene names: 213692894

Gene position: 2228454-2227699 (Counterclockwise)

Preceding gene: 213692895

Following gene: 213692893

Centisome position: 78.67

GC content: 65.74

Gene sequence:

>756_bases
ATGATCAAGGTTTCGGTGGTCGGAGCAAAGGGCCGCATGGGCTCGCACGTGGTCGAAGCGGTGAACAAGGCCGAGGATAC
GCAGCTGGCGCTCGCATTGGATGCCGACGACGACCTGACCCAGGTCACCACCGACAACACCGATGTGGTCGTCGAATTCA
CCGTGCCGTCCGTCAGCCTGAACAACGTGCTGACCCTGATCGGCCAAGGCGTGGACGTGGTGGTCGGCACCACCGGCTGG
ACCGACGAGAAACTCACCCAGGTCAAATCCGCCATCGCCAACGGCCCGAAGCCCGAAACCCAGAAGGTCTTCATCGCACC
TAATTTCGCGATCTCCGCCGTGCTGGCCGACTACTTTGCCACCAAGGCCGCGAGATACTTCGAATCCGCCGAAGTCATCG
AACTGCACCACCCCACCAAGGTGGACGCCCCCTCCGGCACCGCCATCCACACCGCCCACGGCATCGCCGAAGCACGCAAG
GCCGCAGGACTCGCCCCCGTGCCGGACGCCACCGAGACCGATGGCGGCTCACGCGGCCAGGTGGTCGACGGCATCCACGT
GCACGCCGTGCGTCTGCGCGGCCTCAACGCCCACGAGGAAGTGCTCTTCGGCAACGCCGGCGAGCAGCTGACCATTCGGG
CCGACAGCTTCGATCGCACCAGCTTCATGCCCGGCGTCCTGCTTGCCGTGCGCAAGCTCGCCGGCGACGCTCCGGCCGGC
CTGACCATCGGCCTCGACCACTTCCTCGACCTGTAA

Upstream 100 bases:

>100_bases
GGGATATTGGCGTGAGGGCTTGGCGGTGATAGGCTGATTGCCGATTGGAAAACGTCCCGGGTACATTGCCGGGCAGGTAC
GGGTAGACAGGGAAGAAGAC

Downstream 100 bases:

>100_bases
TCGACCCGCAGTCGACCCCGCAATTCGGGCAGGGAAGCGCGCCGGGACGCGCATCACGGCATTGCCGCCGGTTCCGGTCA
TAATGCCACGCATGCAGCAA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MIKVSVVGAKGRMGSHVVEAVNKAEDTQLALALDADDDLTQVTTDNTDVVVEFTVPSVSLNNVLTLIGQGVDVVVGTTGW
TDEKLTQVKSAIANGPKPETQKVFIAPNFAISAVLADYFATKAARYFESAEVIELHHPTKVDAPSGTAIHTAHGIAEARK
AAGLAPVPDATETDGGSRGQVVDGIHVHAVRLRGLNAHEEVLFGNAGEQLTIRADSFDRTSFMPGVLLAVRKLAGDAPAG
LTIGLDHFLDL

Sequences:

>Translated_251_residues
MIKVSVVGAKGRMGSHVVEAVNKAEDTQLALALDADDDLTQVTTDNTDVVVEFTVPSVSLNNVLTLIGQGVDVVVGTTGW
TDEKLTQVKSAIANGPKPETQKVFIAPNFAISAVLADYFATKAARYFESAEVIELHHPTKVDAPSGTAIHTAHGIAEARK
AAGLAPVPDATETDGGSRGQVVDGIHVHAVRLRGLNAHEEVLFGNAGEQLTIRADSFDRTSFMPGVLLAVRKLAGDAPAG
LTIGLDHFLDL
>Mature_251_residues
MIKVSVVGAKGRMGSHVVEAVNKAEDTQLALALDADDDLTQVTTDNTDVVVEFTVPSVSLNNVLTLIGQGVDVVVGTTGW
TDEKLTQVKSAIANGPKPETQKVFIAPNFAISAVLADYFATKAARYFESAEVIELHHPTKVDAPSGTAIHTAHGIAEARK
AAGLAPVPDATETDGGSRGQVVDGIHVHAVRLRGLNAHEEVLFGNAGEQLTIRADSFDRTSFMPGVLLAVRKLAGDAPAG
LTIGLDHFLDL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family

Homologues:

Organism=Escherichia coli, GI1786214, Length=261, Percent_Identity=30.2681992337165, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPB_BIFLI (B7GUF6)

Other databases:

- EMBL:   CP001095
- RefSeq:   YP_002323480.1
- GeneID:   7054968
- GenomeReviews:   CP001095_GR
- KEGG:   bln:Blon_2035
- HOGENOM:   HBG594002
- ProtClustDB:   PRK00048
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00102
- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR20836
- TIGRFAMs:   TIGR00036

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N

EC number: =1.3.1.26

Molecular weight: Translated: 26335; Mature: 26335

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVSVVGAKGRMGSHVVEAVNKAEDTQLALALDADDDLTQVTTDNTDVVVEFTVPSVSL
CEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCEEEEEEEECCCCH
NNVLTLIGQGVDVVVGTTGWTDEKLTQVKSAIANGPKPETQKVFIAPNFAISAVLADYFA
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH
TKAARYFESAEVIELHHPTKVDAPSGTAIHTAHGIAEARKAAGLAPVPDATETDGGSRGQ
HHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VVDGIHVHAVRLRGLNAHEEVLFGNAGEQLTIRADSFDRTSFMPGVLLAVRKLAGDAPAG
EECCEEEEEEEEECCCCHHHEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCC
LTIGLDHFLDL
EEEEHHHHHCC
>Mature Secondary Structure
MIKVSVVGAKGRMGSHVVEAVNKAEDTQLALALDADDDLTQVTTDNTDVVVEFTVPSVSL
CEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCEEEEEEEECCCCH
NNVLTLIGQGVDVVVGTTGWTDEKLTQVKSAIANGPKPETQKVFIAPNFAISAVLADYFA
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH
TKAARYFESAEVIELHHPTKVDAPSGTAIHTAHGIAEARKAAGLAPVPDATETDGGSRGQ
HHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VVDGIHVHAVRLRGLNAHEEVLFGNAGEQLTIRADSFDRTSFMPGVLLAVRKLAGDAPAG
EECCEEEEEEEEECCCCHHHEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCC
LTIGLDHFLDL
EEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA