| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692895
Identifier: 213692895
GI number: 213692895
Start: 2228759
End: 2230078
Strand: Reverse
Name: 213692895
Synonym: Blon_2036
Alternate gene names: NA
Gene position: 2230078-2228759 (Counterclockwise)
Preceding gene: 213692896
Following gene: 213692894
Centisome position: 78.72
GC content: 62.27
Gene sequence:
>1320_bases GTGTCCACGACTCGCGCGGTTTCGAAGTCGTCCGCTGCCCACTCGCCCTACCAGCGCCTGTTCATGCTGCCCGGAGCCAA GGCGTTCTGCCTGTCCGGCGCGGTGGCACGATTGCCGATCTCCATGATGAGTCTCGGCATCGTTCTGGCGCTCAACCATC TCTACGACAATTGGACCATCGCCGGCACCATGAGCGCCGCCTACGTGCTGGCCATGAGCTGCGTCACCCCGTTCTACGCC CGCGCCTTCGACCGTTTCGGCCAAGCCCGCGTGGGCCGGCTTGCGCTCGCCGTGCAGATCGTGGCCATGCTCGCCTTCGC CTTCGCGGCGTTGGTGCGCGTGCCGATTCCGCTGCTGTTCGCCCTGGCCATCATCATGGGTCTGACGCAGTTCTCATTCG GTGCATTGGTCCGAACCCGCTGGTCCTATGCGTTGCGCGGTGTGGAAGATGGCGAACAGCTGCTCAACACGGCCTACGCC ATGGAAGCCGCCATTGACGAGATCGTCTTTATTCTAGGGCCGATTCTGGCGGCTTGGCTGGCCACCTCCGTGCATCCGGT ATCCCAACTGTTCGTGCCCACCGTGGCATGCGGCATCGGCGGCACCATATTCTTCTCGCTGAAATCCACCCAGCCGCCGG TCATCGTGGAACAGGTCACCGTGGCCGCTCACGATGACGGCAGCCCCGCTGCAAGCGAAGATGCCGACCAGCTGACCCTG CGCCAGCTCAAACGCAGCGGTGCCAAGCCCAAAAGCGTATTGCTCTATACCGGCGTACTGCCGTTGCTCGCCGTGTTCAT CGTGTTCAATATGAGCTTCACGTCCTTCGACGTGTCCATCACCGCCACCATGAAATCCATGGGACTTGAGCCCTTCCTCG GTCTGCAATTGGCGATGTTCGCGGTCGGCTCGTGCATCGGCGCGCTGGTGTTCGGCTCTCGCCAACTCAAAGGCTCCCAT TGGGCGCATATGGTGATGTTCCTGTCGCTGTTGACCGTCGGCTACGTGTTCTTCCGGCTGTCAATGGACAATCTCATCCT GCTGGGCGTCTTCGAAATTCTCTCCGGCCTGACCGTCTCGCCGACGTTCGCCACCGGCAACCTCATCGTCAAGGATCTGG TGCCGGCGGAATCCCTGACCGAAGGACTGAGCTGGGTAACCACCGCAGGCACGGTCGGCACCTCGATTGGCTCGTCCGTG GCCGGTATTGTGCTTGACGCCTCCAACCCTCATGTGGGCATGATGCTGCCATTCATCTTCACGCTGGCGTCCGTGCCATT GGCGTTGGCCGGATGGGCCTTGGCCAAGCGGCGTGGGTGA
Upstream 100 bases:
>100_bases GGTTGAAACGCACCGCGTGACGTTGCTCGGGAACCGCTACCCTCGGATGGCACGTGTGGGCGGGCGCACGTGCCGGACAA CGCACCAGTAAGGAGTTATT
Downstream 100 bases:
>100_bases AACGGGATCGGGCTACGCCCGATGGATGGTTGGCGGCTTCGCCGGGGTCTCTCCCTCAGTCCGCTTCACGGCCAGCTCGA ACGCAATTAAATGATGGCTT
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: Facilitator Transporter; Transmembrane Efflux Protein; ABC Transporter Permease Protein; ABC Transporter Permease; ABC Transporter; Facilitator Superfamily Transporter Permease; Facilitator Superfamily Permease; Transmembrane Transporter; MFS Family Transmembrane Protein; Arabinose Efflux Permease Family Protein; ABC Transporter Integral Membrane Protein; Integral Membrane Protein; MFS Superfamily Transporter; Permease; Mfs Transporter; Facilitator Superfamily Transporter; LOW QUALITY PROTEIN MFS Superfamily Transporter; Facilitator MFS1 Protein; Transporter-Like Membrane Protein; Efflux Protein; Permease Of Facilitator Superfamily; Transporter Facilitator Family Protein; MFS-Family Transporter; MFS Family Transporter; ABC Transporter Membrane Spanning Protein
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MSTTRAVSKSSAAHSPYQRLFMLPGAKAFCLSGAVARLPISMMSLGIVLALNHLYDNWTIAGTMSAAYVLAMSCVTPFYA RAFDRFGQARVGRLALAVQIVAMLAFAFAALVRVPIPLLFALAIIMGLTQFSFGALVRTRWSYALRGVEDGEQLLNTAYA MEAAIDEIVFILGPILAAWLATSVHPVSQLFVPTVACGIGGTIFFSLKSTQPPVIVEQVTVAAHDDGSPAASEDADQLTL RQLKRSGAKPKSVLLYTGVLPLLAVFIVFNMSFTSFDVSITATMKSMGLEPFLGLQLAMFAVGSCIGALVFGSRQLKGSH WAHMVMFLSLLTVGYVFFRLSMDNLILLGVFEILSGLTVSPTFATGNLIVKDLVPAESLTEGLSWVTTAGTVGTSIGSSV AGIVLDASNPHVGMMLPFIFTLASVPLALAGWALAKRRG
Sequences:
>Translated_439_residues MSTTRAVSKSSAAHSPYQRLFMLPGAKAFCLSGAVARLPISMMSLGIVLALNHLYDNWTIAGTMSAAYVLAMSCVTPFYA RAFDRFGQARVGRLALAVQIVAMLAFAFAALVRVPIPLLFALAIIMGLTQFSFGALVRTRWSYALRGVEDGEQLLNTAYA MEAAIDEIVFILGPILAAWLATSVHPVSQLFVPTVACGIGGTIFFSLKSTQPPVIVEQVTVAAHDDGSPAASEDADQLTL RQLKRSGAKPKSVLLYTGVLPLLAVFIVFNMSFTSFDVSITATMKSMGLEPFLGLQLAMFAVGSCIGALVFGSRQLKGSH WAHMVMFLSLLTVGYVFFRLSMDNLILLGVFEILSGLTVSPTFATGNLIVKDLVPAESLTEGLSWVTTAGTVGTSIGSSV AGIVLDASNPHVGMMLPFIFTLASVPLALAGWALAKRRG >Mature_438_residues STTRAVSKSSAAHSPYQRLFMLPGAKAFCLSGAVARLPISMMSLGIVLALNHLYDNWTIAGTMSAAYVLAMSCVTPFYAR AFDRFGQARVGRLALAVQIVAMLAFAFAALVRVPIPLLFALAIIMGLTQFSFGALVRTRWSYALRGVEDGEQLLNTAYAM EAAIDEIVFILGPILAAWLATSVHPVSQLFVPTVACGIGGTIFFSLKSTQPPVIVEQVTVAAHDDGSPAASEDADQLTLR QLKRSGAKPKSVLLYTGVLPLLAVFIVFNMSFTSFDVSITATMKSMGLEPFLGLQLAMFAVGSCIGALVFGSRQLKGSHW AHMVMFLSLLTVGYVFFRLSMDNLILLGVFEILSGLTVSPTFATGNLIVKDLVPAESLTEGLSWVTTAGTVGTSIGSSVA GIVLDASNPHVGMMLPFIFTLASVPLALAGWALAKRRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46645; Mature: 46513
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTRAVSKSSAAHSPYQRLFMLPGAKAFCLSGAVARLPISMMSLGIVLALNHLYDNWTI CCCCHHHHHCCCCCCHHHHHHCCCCCHHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCEE AGTMSAAYVLAMSCVTPFYARAFDRFGQARVGRLALAVQIVAMLAFAFAALVRVPIPLLF EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAIIMGLTQFSFGALVRTRWSYALRGVEDGEQLLNTAYAMEAAIDEIVFILGPILAAWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATSVHPVSQLFVPTVACGIGGTIFFSLKSTQPPVIVEQVTVAAHDDGSPAASEDADQLTL HHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHH RQLKRSGAKPKSVLLYTGVLPLLAVFIVFNMSFTSFDVSITATMKSMGLEPFLGLQLAMF HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCHHHHHHHHHH AVGSCIGALVFGSRQLKGSHWAHMVMFLSLLTVGYVFFRLSMDNLILLGVFEILSGLTVS HHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC PTFATGNLIVKDLVPAESLTEGLSWVTTAGTVGTSIGSSVAGIVLDASNPHVGMMLPFIF CCCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHH TLASVPLALAGWALAKRRG HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STTRAVSKSSAAHSPYQRLFMLPGAKAFCLSGAVARLPISMMSLGIVLALNHLYDNWTI CCCHHHHHCCCCCCHHHHHHCCCCCHHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCEE AGTMSAAYVLAMSCVTPFYARAFDRFGQARVGRLALAVQIVAMLAFAFAALVRVPIPLLF EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAIIMGLTQFSFGALVRTRWSYALRGVEDGEQLLNTAYAMEAAIDEIVFILGPILAAWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATSVHPVSQLFVPTVACGIGGTIFFSLKSTQPPVIVEQVTVAAHDDGSPAASEDADQLTL HHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHH RQLKRSGAKPKSVLLYTGVLPLLAVFIVFNMSFTSFDVSITATMKSMGLEPFLGLQLAMF HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCHHHHHHHHHH AVGSCIGALVFGSRQLKGSHWAHMVMFLSLLTVGYVFFRLSMDNLILLGVFEILSGLTVS HHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC PTFATGNLIVKDLVPAESLTEGLSWVTTAGTVGTSIGSSVAGIVLDASNPHVGMMLPFIF CCCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHH TLASVPLALAGWALAKRRG HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA