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The map label for this gene is ydcR [C]

Identifier: 213692717

GI number: 213692717

Start: 2019017

End: 2019466

Strand: Reverse

Name: ydcR [C]

Synonym: Blon_1850

Alternate gene names: 213692717

Gene position: 2019466-2019017 (Counterclockwise)

Preceding gene: 213692718

Following gene: 213692716

Centisome position: 71.29

GC content: 61.11

Gene sequence:

>450_bases
GTGATTGTGGAAATCGATCAGCGCAGTGACGTGCCGATTTACGAGCAGCTGCACAGGCAGCTCATCGCAGCCATCGCGGG
CGATGAGCTGTCGCCAGGTGACTCGTTACCGTCCGTGCGCTCGCTGGCCGTGGACCTTGGCATCAACCTGCACACGGTGA
ACAAGGCCTATGCGCTGTTGCGTGACGAGGGATACATCGTTATGCGTCGTGGTGCCGGTGCAACCGTCGCCGAGCATGAC
GGCGGGGGAGAAGCACCGAACCGAACTGCCGAAGCACAGGATGAGCGGATGGGCGAGGAACTCTATCGCCTTGCCTTGGC
CTACAGGGCGCGCGGCGGTGATTCGGCCGCATTCCTCGATGCCACCAAACGGCAATGCGAACGGGCATACGGCGTGCGCT
CCTCGCAGAGCGTTACTGACGGTGCAACAAAAGGAAATCAGGGGAGATAA

Upstream 100 bases:

>100_bases
GGATGTTCAACCGAGATTCGCATATCTTGACTCATACGGCAAAACTGTTATATTTGATGTAGAACAAATAGAACAGTTCT
TGAGAGGGGTGGAATTGACC

Downstream 100 bases:

>100_bases
CGATGAATAATACAGTCGTGTCGATGAACATCGCGTTGTGTGCGTTTTTACTGTTGCCGGTGATAGTGACCGCCGGCCTG
GCAGGGGTTCCATGGGTTAC

Product: regulatory protein GntR, HTH

Products: NA

Alternate protein names: GntR Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein GntR HTH; Transcriptional Regulator-Like Protein; Regulator; Gntr Family Transcriptional Regulator; Regulatory Protein; Aminotransferase Classes I And II Superfamily; Transcription Regulator; Transcriptional Regulator GntR Family Protein; Transcription Regulator GntR Family

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MIVEIDQRSDVPIYEQLHRQLIAAIAGDELSPGDSLPSVRSLAVDLGINLHTVNKAYALLRDEGYIVMRRGAGATVAEHD
GGGEAPNRTAEAQDERMGEELYRLALAYRARGGDSAAFLDATKRQCERAYGVRSSQSVTDGATKGNQGR

Sequences:

>Translated_149_residues
MIVEIDQRSDVPIYEQLHRQLIAAIAGDELSPGDSLPSVRSLAVDLGINLHTVNKAYALLRDEGYIVMRRGAGATVAEHD
GGGEAPNRTAEAQDERMGEELYRLALAYRARGGDSAAFLDATKRQCERAYGVRSSQSVTDGATKGNQGR
>Mature_149_residues
MIVEIDQRSDVPIYEQLHRQLIAAIAGDELSPGDSLPSVRSLAVDLGINLHTVNKAYALLRDEGYIVMRRGAGATVAEHD
GGGEAPNRTAEAQDERMGEELYRLALAYRARGGDSAAFLDATKRQCERAYGVRSSQSVTDGATKGNQGR

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16088; Mature: 16088

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVEIDQRSDVPIYEQLHRQLIAAIAGDELSPGDSLPSVRSLAVDLGINLHTVNKAYALL
CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHHH
RDEGYIVMRRGAGATVAEHDGGGEAPNRTAEAQDERMGEELYRLALAYRARGGDSAAFLD
CCCCEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ATKRQCERAYGVRSSQSVTDGATKGNQGR
HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIVEIDQRSDVPIYEQLHRQLIAAIAGDELSPGDSLPSVRSLAVDLGINLHTVNKAYALL
CEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHHH
RDEGYIVMRRGAGATVAEHDGGGEAPNRTAEAQDERMGEELYRLALAYRARGGDSAAFLD
CCCCEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ATKRQCERAYGVRSSQSVTDGATKGNQGR
HHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA