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The map label for this gene is yhdR [H]

Identifier: 213692315

GI number: 213692315

Start: 1596552

End: 1597742

Strand: Direct

Name: yhdR [H]

Synonym: Blon_1439

Alternate gene names: 213692315

Gene position: 1596552-1597742 (Clockwise)

Preceding gene: 213692313

Following gene: 213692316

Centisome position: 56.36

GC content: 62.64

Gene sequence:

>1191_bases
ATGATCAATGAGGAATACAAGGCCATGCTTGGCGGCAAGTCCGTGATTCGCGAACTGAGCGAGTACGCCACGAGCCGCGG
TGCTGAAATCGGCTACCAGAACATGTTCGATTACAGCCTTGGCAATCCCTCAGTGCCGGCTCCGAAATCCTTCACCGACG
CCATGGTCGACCTCTACGAAAACGGCGATCCTGCGGCCATCCACGGCTACTCCCCCTCGCTCGGCATCCCGTCCGTCAAG
GACGCGATCGCCGAAAACCTCAACGAACGTTTCGGCATGGCATACACCGGCAACCATATCTTCCCGACCACGGGCGCGGC
GGGCGCGCTGTCCCACGCGATGCGCGCGGTGACCAAGCCGGGCGACGAGATCATCACCTTCGCCCCCTACTTCCCCGAAT
ACCAGCCGTACGTCAAGGGCATCGGCGCCAAGCTGACCATCGTGCCGGCCGACACCGAGAACTTCCAGATCAACTTCGAG
GCGTTCGAGGCCGCGCTCAACCCGAACGTGCAGGCCGCGCTCATCAACACCCCGAACAACCCGTCCGGCGCGGTGTATTC
GGCGGACACGCTCAAGCGTCTGGCCGCGATCCTGACCGCCAAGCAGGCCGAGTACGGCCACGACATCTTCCTGATCAGCG
ACGAACCGTACCGCGAAATCGTGTTCGACGGCGCCACCCAGCCCTACCCGGCCAGCTTCTACGCGAACACCCTGACCTGC
TACTCGTGGTCGAAATCGCTGAGCCTGCCGGGCGAACGCATCGGCTATGTCGCGGTGAACCCCACAGCCACCGACGCCGA
CCTGCTCGTGCCCATGATGGGCCAGATCTCGCGCGGCATCGGCCACAACTGCCCGCCGAGCTCGATTCAGCTGGGCGTGG
CCAAGGTCATCGACCAAACCGCCGATCTCAACGTCTACGAGACGAACATGAACCTGCTCTACGATGCGCTGACCGGTATC
GGCTTCGACGTGGTGCGCCCTGGCGGCACGTTCTACATCTTCCCCAAGGCGTTGGAGGACGACGCCGTGGCGTTCTGCAT
GAAGGCCAAGGAATACGACCTGATCCTCGTGCCGTCCGACAGTTTCGGCGTGCCCGGATACTTCCGCATGGCCTACTGCA
TCGACACGGAGAAGGTCAAGCGCTCGATCCCCGTGCTCGAAAAGTTCGCCCACGAGGTGTACGGCCTGTAA

Upstream 100 bases:

>100_bases
ATAGAACAGCCGGCTTAGGCACGGCGCGGCAAATGGCGCAAACCGGCCGCGATAGTAGTAGCGTGGTGCATACCAGTACA
ACCATGCGAGGAGAACAGCC

Downstream 100 bases:

>100_bases
ACACGGACCGCAAGTAACAAACACAGGAAAGGGGTTGCCATGGAATACACCGAAGACGCCGATCGTCGCGAACTGCTACT
GCACAGCGCCTATGACTCCG

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MINEEYKAMLGGKSVIRELSEYATSRGAEIGYQNMFDYSLGNPSVPAPKSFTDAMVDLYENGDPAAIHGYSPSLGIPSVK
DAIAENLNERFGMAYTGNHIFPTTGAAGALSHAMRAVTKPGDEIITFAPYFPEYQPYVKGIGAKLTIVPADTENFQINFE
AFEAALNPNVQAALINTPNNPSGAVYSADTLKRLAAILTAKQAEYGHDIFLISDEPYREIVFDGATQPYPASFYANTLTC
YSWSKSLSLPGERIGYVAVNPTATDADLLVPMMGQISRGIGHNCPPSSIQLGVAKVIDQTADLNVYETNMNLLYDALTGI
GFDVVRPGGTFYIFPKALEDDAVAFCMKAKEYDLILVPSDSFGVPGYFRMAYCIDTEKVKRSIPVLEKFAHEVYGL

Sequences:

>Translated_396_residues
MINEEYKAMLGGKSVIRELSEYATSRGAEIGYQNMFDYSLGNPSVPAPKSFTDAMVDLYENGDPAAIHGYSPSLGIPSVK
DAIAENLNERFGMAYTGNHIFPTTGAAGALSHAMRAVTKPGDEIITFAPYFPEYQPYVKGIGAKLTIVPADTENFQINFE
AFEAALNPNVQAALINTPNNPSGAVYSADTLKRLAAILTAKQAEYGHDIFLISDEPYREIVFDGATQPYPASFYANTLTC
YSWSKSLSLPGERIGYVAVNPTATDADLLVPMMGQISRGIGHNCPPSSIQLGVAKVIDQTADLNVYETNMNLLYDALTGI
GFDVVRPGGTFYIFPKALEDDAVAFCMKAKEYDLILVPSDSFGVPGYFRMAYCIDTEKVKRSIPVLEKFAHEVYGL
>Mature_396_residues
MINEEYKAMLGGKSVIRELSEYATSRGAEIGYQNMFDYSLGNPSVPAPKSFTDAMVDLYENGDPAAIHGYSPSLGIPSVK
DAIAENLNERFGMAYTGNHIFPTTGAAGALSHAMRAVTKPGDEIITFAPYFPEYQPYVKGIGAKLTIVPADTENFQINFE
AFEAALNPNVQAALINTPNNPSGAVYSADTLKRLAAILTAKQAEYGHDIFLISDEPYREIVFDGATQPYPASFYANTLTC
YSWSKSLSLPGERIGYVAVNPTATDADLLVPMMGQISRGIGHNCPPSSIQLGVAKVIDQTADLNVYETNMNLLYDALTGI
GFDVVRPGGTFYIFPKALEDDAVAFCMKAKEYDLILVPSDSFGVPGYFRMAYCIDTEKVKRSIPVLEKFAHEVYGL

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=389, Percent_Identity=22.6221079691517, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI95147551, Length=323, Percent_Identity=24.1486068111455, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI169881279, Length=323, Percent_Identity=24.1486068111455, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI56713256, Length=294, Percent_Identity=23.1292517006803, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI56713254, Length=294, Percent_Identity=23.1292517006803, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1788627, Length=386, Percent_Identity=26.4248704663212, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1786816, Length=367, Percent_Identity=23.9782016348774, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788722, Length=385, Percent_Identity=23.8961038961039, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790797, Length=198, Percent_Identity=32.8282828282828, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787710, Length=203, Percent_Identity=30.5418719211823, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=381, Percent_Identity=25.1968503937008, Blast_Score=116, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17567369, Length=297, Percent_Identity=28.2828282828283, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994472, Length=255, Percent_Identity=29.4117647058824, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71994476, Length=255, Percent_Identity=29.4117647058824, Blast_Score=92, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6322401, Length=295, Percent_Identity=26.4406779661017, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI18859735, Length=383, Percent_Identity=22.7154046997389, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28573069, Length=271, Percent_Identity=25.830258302583, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24646114, Length=271, Percent_Identity=25.830258302583, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28573067, Length=271, Percent_Identity=25.830258302583, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28573065, Length=271, Percent_Identity=25.830258302583, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 43075; Mature: 43075

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINEEYKAMLGGKSVIRELSEYATSRGAEIGYQNMFDYSLGNPSVPAPKSFTDAMVDLYE
CCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHEEECCCCCCCCCCCHHHHHHHHHHC
NGDPAAIHGYSPSLGIPSVKDAIAENLNERFGMAYTGNHIFPTTGAAGALSHAMRAVTKP
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEECCCCCHHHHHHHHHHHCCC
GDEIITFAPYFPEYQPYVKGIGAKLTIVPADTENFQINFEAFEAALNPNVQAALINTPNN
CCCEEEECCCCCCCCHHHHCCCCEEEEEECCCCCEEEEHHHHHHHCCCCEEEEEEECCCC
PSGAVYSADTLKRLAAILTAKQAEYGHDIFLISDEPYREIVFDGATQPYPASFYANTLTC
CCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHEECCCCCCCCCHHHHCEEEE
YSWSKSLSLPGERIGYVAVNPTATDADLLVPMMGQISRGIGHNCPPSSIQLGVAKVIDQT
EECCCCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
ADLNVYETNMNLLYDALTGIGFDVVRPGGTFYIFPKALEDDAVAFCMKAKEYDLILVPSD
CCCEEEECCHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHEECCCCCEEEECCC
SFGVPGYFRMAYCIDTEKVKRSIPVLEKFAHEVYGL
CCCCCCCEEEEEEECHHHHHHHCHHHHHHHHHHHCC
>Mature Secondary Structure
MINEEYKAMLGGKSVIRELSEYATSRGAEIGYQNMFDYSLGNPSVPAPKSFTDAMVDLYE
CCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHEEECCCCCCCCCCCHHHHHHHHHHC
NGDPAAIHGYSPSLGIPSVKDAIAENLNERFGMAYTGNHIFPTTGAAGALSHAMRAVTKP
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEECCCCCHHHHHHHHHHHCCC
GDEIITFAPYFPEYQPYVKGIGAKLTIVPADTENFQINFEAFEAALNPNVQAALINTPNN
CCCEEEECCCCCCCCHHHHCCCCEEEEEECCCCCEEEEHHHHHHHCCCCEEEEEEECCCC
PSGAVYSADTLKRLAAILTAKQAEYGHDIFLISDEPYREIVFDGATQPYPASFYANTLTC
CCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHEECCCCCCCCCHHHHCEEEE
YSWSKSLSLPGERIGYVAVNPTATDADLLVPMMGQISRGIGHNCPPSSIQLGVAKVIDQT
EECCCCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
ADLNVYETNMNLLYDALTGIGFDVVRPGGTFYIFPKALEDDAVAFCMKAKEYDLILVPSD
CCCEEEECCHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHEECCCCCEEEECCC
SFGVPGYFRMAYCIDTEKVKRSIPVLEKFAHEVYGL
CCCCCCCEEEEEEECHHHHHHHCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]