| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is insQ [H]
Identifier: 213692061
GI number: 213692061
Start: 1363810
End: 1365132
Strand: Direct
Name: insQ [H]
Synonym: Blon_1179
Alternate gene names: 213692061
Gene position: 1363810-1365132 (Clockwise)
Preceding gene: 213692059
Following gene: 213692064
Centisome position: 48.14
GC content: 59.86
Gene sequence:
>1323_bases ATGCGTTGGCTGTGCGACGGGTGGCGTTGCCGATACAACCAGTTGCGTTCCCGTAGAACCAAATGGGATAAAAACCTTGG CATGAGCATTCCGTTGGGCGGGAAGCCGGACATGCGCTCCGACCGTCAGGTAAGACTGGAGTGCTCATGGTTCGCAGCCA TCCCCGCAATGGTGCTGCAATCCCCGAACAGGATAGAGAACACGGACTGGTGGAGCGCGAACAAACGCCGCAAAACATTG AAGAAGAAGCATCGGAACCCGGGCATGACGCCCCGGTTCAAAAAACGGCGTGACGACCTGTATTTCGTCTGCTGGCACAA CAAGGGCGCGAACGCGAACTACCGTCAGTTGAACCGGCGTCACGGCGAGGTCGTCATCACCGGACAGAACCCCGGCGCAT ATCGTCTGGACGGCCAACGGTGCCGGTACAGCATCCACATCCGCGTCCGCGTCAGCCAACCCATCCGCGACTATACGAGC GTCGACGTGAACTGGACGAGACGAACACTCGTGTTCGTCAACGACCCGCTGCCGATAGGCCGTGAGCGCACGGGTGCGAT GGTCGGATTGGACAGGGGTTGCGTCCACACGCTCGCCACGTCCGACAATCGTTTCATCGACCTCCCCAAAGACCGGTTGA ACCATATCGACAAGGAGATACGCCGCCGTCAGAAGGCTCAGGCGCGACGAATCGCCATGTCCGGCGAAACCGTCAAACAA TACCGGCGTCATGCGAGCCGCACCTACGAGCGTACCGGTCGGGAAATCAGCCGACTGTACGCGAAGGCACACCGCATCAT AGACGACTGGCAGCACAAGACCACCAGCATGCTAGTCCGCGAATACGACCTCATCGTATTGGAAGACCTCAACCTGCAAG GCATGAGCCGCAAAGCCAAGGCGAAACCAGACCCGGACAGGCCGGGCGCGTTTCTACCCAACGGACAGTCGGCGAAACGT GAACTCAACCGCAGCCTACGCGCCGCAAGCCTCGCCGGAATCGTCGGCAAACTCGAATACAAGACCCGGCTGACCGGACG AAACCGTCTCATATTCGTCAACCCCGCGTACACGTCGCAGACATGCAGCAAGTGCGGGCATTGCGCCAAGGAGAACCGCG AAAGCCAAGCGGACTTCGAATGCAGGCAATGCCACGCGCGCATGAACGCTGACCTGAACGCGGCCAACAACATCCTCAAA CGGGGATTGAACCATCTCCTCGGCTTGGACGAAGCCGGGCACGCCGAAACGGAGCCAGACGCCCAACCCGCCTATCGCGG GAAGGACGCTTCCGCCATGACGTGCGAAACCTCAACACGATAA
Upstream 100 bases:
>100_bases AGAAAGCGTGCAGATACGGGGAGCCGCCCCGTATCTCGGCATGTGCGTGGCCTCGGACGGACGGCAAATCCCCCTGTATT CAACCAATCCCGACATAGTG
Downstream 100 bases:
>100_bases CAACACGTGTTGGAATCCCGGTGTTTCAACACCGGGAGGACGTCAAGTAGCTCGTATCCGAACCGCCCATGATACCGTTT CCCCTCCGTCATGGATCTCC
Product: transposase, IS605 OrfB family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MRWLCDGWRCRYNQLRSRRTKWDKNLGMSIPLGGKPDMRSDRQVRLECSWFAAIPAMVLQSPNRIENTDWWSANKRRKTL KKKHRNPGMTPRFKKRRDDLYFVCWHNKGANANYRQLNRRHGEVVITGQNPGAYRLDGQRCRYSIHIRVRVSQPIRDYTS VDVNWTRRTLVFVNDPLPIGRERTGAMVGLDRGCVHTLATSDNRFIDLPKDRLNHIDKEIRRRQKAQARRIAMSGETVKQ YRRHASRTYERTGREISRLYAKAHRIIDDWQHKTTSMLVREYDLIVLEDLNLQGMSRKAKAKPDPDRPGAFLPNGQSAKR ELNRSLRAASLAGIVGKLEYKTRLTGRNRLIFVNPAYTSQTCSKCGHCAKENRESQADFECRQCHARMNADLNAANNILK RGLNHLLGLDEAGHAETEPDAQPAYRGKDASAMTCETSTR
Sequences:
>Translated_440_residues MRWLCDGWRCRYNQLRSRRTKWDKNLGMSIPLGGKPDMRSDRQVRLECSWFAAIPAMVLQSPNRIENTDWWSANKRRKTL KKKHRNPGMTPRFKKRRDDLYFVCWHNKGANANYRQLNRRHGEVVITGQNPGAYRLDGQRCRYSIHIRVRVSQPIRDYTS VDVNWTRRTLVFVNDPLPIGRERTGAMVGLDRGCVHTLATSDNRFIDLPKDRLNHIDKEIRRRQKAQARRIAMSGETVKQ YRRHASRTYERTGREISRLYAKAHRIIDDWQHKTTSMLVREYDLIVLEDLNLQGMSRKAKAKPDPDRPGAFLPNGQSAKR ELNRSLRAASLAGIVGKLEYKTRLTGRNRLIFVNPAYTSQTCSKCGHCAKENRESQADFECRQCHARMNADLNAANNILK RGLNHLLGLDEAGHAETEPDAQPAYRGKDASAMTCETSTR >Mature_440_residues MRWLCDGWRCRYNQLRSRRTKWDKNLGMSIPLGGKPDMRSDRQVRLECSWFAAIPAMVLQSPNRIENTDWWSANKRRKTL KKKHRNPGMTPRFKKRRDDLYFVCWHNKGANANYRQLNRRHGEVVITGQNPGAYRLDGQRCRYSIHIRVRVSQPIRDYTS VDVNWTRRTLVFVNDPLPIGRERTGAMVGLDRGCVHTLATSDNRFIDLPKDRLNHIDKEIRRRQKAQARRIAMSGETVKQ YRRHASRTYERTGREISRLYAKAHRIIDDWQHKTTSMLVREYDLIVLEDLNLQGMSRKAKAKPDPDRPGAFLPNGQSAKR ELNRSLRAASLAGIVGKLEYKTRLTGRNRLIFVNPAYTSQTCSKCGHCAKENRESQADFECRQCHARMNADLNAANNILK RGLNHLLGLDEAGHAETEPDAQPAYRGKDASAMTCETSTR
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG0675
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transposase 35 family [H]
Homologues:
Organism=Escherichia coli, GI288549314, Length=219, Percent_Identity=34.2465753424658, Blast_Score=109, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001959 - InterPro: IPR010095 - InterPro: IPR021027 [H]
Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]
EC number: NA
Molecular weight: Translated: 50939; Mature: 50939
Theoretical pI: Translated: 10.87; Mature: 10.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWLCDGWRCRYNQLRSRRTKWDKNLGMSIPLGGKPDMRSDRQVRLECSWFAAIPAMVLQ CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHC SPNRIENTDWWSANKRRKTLKKKHRNPGMTPRFKKRRDDLYFVCWHNKGANANYRQLNRR CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEECCCCCCCHHHHHHCC HGEVVITGQNPGAYRLDGQRCRYSIHIRVRVSQPIRDYTSVDVNWTRRTLVFVNDPLPIG CCCEEEECCCCCCEEECCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCC RERTGAMVGLDRGCVHTLATSDNRFIDLPKDRLNHIDKEIRRRQKAQARRIAMSGETVKQ CCCCCCEEECCCCHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH YRRHASRTYERTGREISRLYAKAHRIIDDWQHKTTSMLVREYDLIVLEDLNLQGMSRKAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC AKPDPDRPGAFLPNGQSAKRELNRSLRAASLAGIVGKLEYKTRLTGRNRLIFVNPAYTSQ CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCHH TCSKCGHCAKENRESQADFECRQCHARMNADLNAANNILKRGLNHLLGLDEAGHAETEPD HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC AQPAYRGKDASAMTCETSTR CCCCCCCCCCCEEEECCCCC >Mature Secondary Structure MRWLCDGWRCRYNQLRSRRTKWDKNLGMSIPLGGKPDMRSDRQVRLECSWFAAIPAMVLQ CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHC SPNRIENTDWWSANKRRKTLKKKHRNPGMTPRFKKRRDDLYFVCWHNKGANANYRQLNRR CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEECCCCCCCHHHHHHCC HGEVVITGQNPGAYRLDGQRCRYSIHIRVRVSQPIRDYTSVDVNWTRRTLVFVNDPLPIG CCCEEEECCCCCCEEECCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCC RERTGAMVGLDRGCVHTLATSDNRFIDLPKDRLNHIDKEIRRRQKAQARRIAMSGETVKQ CCCCCCEEECCCCHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH YRRHASRTYERTGREISRLYAKAHRIIDDWQHKTTSMLVREYDLIVLEDLNLQGMSRKAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC AKPDPDRPGAFLPNGQSAKRELNRSLRAASLAGIVGKLEYKTRLTGRNRLIFVNPAYTSQ CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCHH TCSKCGHCAKENRESQADFECRQCHARMNADLNAANNILKRGLNHLLGLDEAGHAETEPD HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC AQPAYRGKDASAMTCETSTR CCCCCCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]